Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13 205 3e-47 seq9 143 8e-29 seq12 123 7e-23 seq5 95.1 4e-14 seq4 84.2 6e-11 >seq13 Length=2538962 Score = 205 bits (226), Expect = 3e-47 Identities = 803/1239 (65%), Gaps = 34/1239 (3%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||||| ||| ||| |||| || || ||||| || |||||| | | |||||| | Sbjct 815372 TTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTAGCAGAAT 815313 Query 155371 CAGATGTAAATGCGATATCCATCTTGAA-AAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 | ||| | | | |||||| | | ||| || || || || || ||||| || || Sbjct 815312 CTGATTCATAGG-GATATCTTAATAACATAAAAGTATCAGCCAATCCTTGAACCCCTATT 815254 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCAC 155488 || | ||| | ||| || |||| || || | |||||| ||||||| |||| Sbjct 815253 CCTATTGGTCTATGTCTTGTATTGGATCTTCTAG-CTTCTTCAACTGGGTAATAATTTCT 815195 Query 155489 ATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAA--TTTC 155543 || ||||| |||| |||||| |||| | | || || | | || ||| |||| Sbjct 815194 TTCTATAATTTTATCCAAATTTCGTGTAATAATT---TTTGTAA--TTTGGTAAAGTTTC 815140 Query 155544 ACATAGTCAAATGTTTTATCCTC---ATTTACAAACATACCAAGACCAATAGACGCCAGA 155600 | | | |||| ||| | ||| || |||||| | | | | ||||| |||||| Sbjct 815139 TTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCCAGA 815080 Query 155601 TTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGA 155659 |||||||| ||| || | | | | ||||||| | ||||||||| || | |||| Sbjct 815079 TTACATACAGCAACTTCATCAGGAGATG-TGTATTCAATAATCTCACAACATAAGTTACT 815021 Query 155660 ACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAG 155719 || || || || |||||||| ||||| || |||||| ||||| | ||| || || || Sbjct 815020 ACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAAAG 814961 Query 155720 AATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTT--AGCCAGAGGTCACGG 155777 ||||| ||| ||||| || ||||| || || ||| | | ||| | || | Sbjct 814960 CATGTAAGGGACACCTGTTTCTATCTG-GC-TCTGTAATATAGCAAACCATAAATCTTGT 814903 Query 155778 GCATTAATTTGCTTGTTGTATC-TGCCTTCCGACTCATATTTCATATACAGCGTTCGGTA 155836 || | | || || || | || ||| ||||||||| |||| | | || | Sbjct 814902 GC-TAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTTCAAA 814844 Query 155837 ATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAAT 155896 || ||||| | || || | || || |||| || || || | | | |||| | Sbjct 814843 TTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCCAATT 814784 Query 155897 TTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTC 155956 |||||| | | || | | |||||| | ||| |||| | |||||||||||| || Sbjct 814783 TTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGCATAGAAAAGATC 814724 Query 155957 CCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATC 156016 | || || | || || | || ||||| || | || ||||| ||||| ||| || Sbjct 814723 TCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTC 814664 Query 156017 AGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATC 156073 || ||| ||| || | || | ||||||| || || || || || || ||||| Sbjct 814663 AGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTGATC 814604 Query 156074 TACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG-AATAATACCATTGGAAGTGC 156132 |||||| | |||||| | |||||| || | ||||||||| | |||| || ||||| | | Sbjct 814603 TACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGATATTC 814545 Query 156133 CATTGGTTCCGCGAATATGCGAACCAGATGA--GCGAACATTATGAATATGTAGTCCAAT 156190 |||| ||||| | ||||| ||| ||| | | || || | | |||||| Sbjct 814544 CATTCGTTCCTCTAATATATGAA--TTTTGACCTCTTATATCTTGCACTGCAACTCCAAT 814487 Query 156191 ACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAAT 156250 |||||| | ||| |||| || |||| || | || | |||||| ||||| || Sbjct 814486 ACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCTTCTAT 814427 Query 156251 AGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGC 156310 ||||| || |||||||| || | | |||||| | ||| |||| ||| ||||||| Sbjct 814426 CGAATCTGATTTCATTGATAATAAAAAACACGAAGACATTTGTGGTCTTGGAGTTCCAGA 814367 Query 156311 GTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 ||||||| |||||| |||||||| | ||||| || | ||||| | | ||||| || Sbjct 814366 ATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGATATGTTTC 814307 Query 156371 CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTG 156430 || || | || || || | ||||| || ||||| ||| ||| || Sbjct 814306 AAGTGCTTTTTCCAAATCGTCAATATGGATTCCAATAGATACTCTCATTAACAAATGTTG 814247 Query 156431 AGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAA 156490 || | || | ||| |||| ||| || || | |||| ||||| | || ||||| Sbjct 814246 TGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAATGTCTTAAA 814187 Query 156491 CCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 || || |||||| | |||||||| | ||||| || Sbjct 814186 ACCAAAGTAATCATAATTGAAATCACGTGTATAATCTAT 814148 >seq9 Length=2239043 Score = 143 bits (158), Expect = 8e-29 Identities = 277/405 (68%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || |||||||| | ||| | |||||| ||||||||| ||| Sbjct 793130 AAATCCATCCATTTCTACCAACATTTGATTTAATGTATTTTCCCTCTCATCATTTCCACC 793189 Query 288999 TCTTG--AATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAA 289056 || || |||| || ||| || | || ||||||||||||||||||| |||||||| Sbjct 793190 TCCTGCAAATCCACCTT-TCGATC-TCTTCCTACCAACAGCATCAATTTCATCAATGAAT 793247 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 || | | || | || || || || |||||||||||||||||| | || | |||| Sbjct 793248 ATAATTGAAGGTGCATGTTTCCTAGCTTGTGCAAATAATTCTCTTACTCTTGAAGGTCCA 793307 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCT 289176 | ||||||| | | ||| | ||| ||| || || | || || | || || ||| Sbjct 793308 ATACCAACAAAAACTTCAATAAAATCACTTCCGCTTATGTTAAAAAAAGGAACGTTGGCT 793367 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || ||||| || |||| | | || || ||||| || |||| || | || Sbjct 793368 TCTCCAGCTACAGCTTTCGCTAATAAAGTTTTTCCTGTCCCTGGTGCACCACAGAGAAGT 793427 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || ||||| | |||||| || || | |||||| || | |||||||| ||| Sbjct 793428 GCACCTTTTGGCATTTTTGCACCCAAAGTTTCATATTTGGATGGATTTTTTAAAAAGTCT 793487 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACA 289341 |||| |||| | ||| | |||||| | | |||||||||| Sbjct 793488 ACAAATTCCATTATTTCCTCTTTTGCTTGTTTCATTCCTGCTACA 793532 >seq12 Length=3573180 Score = 123 bits (136), Expect = 7e-23 Identities = 234/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||||||||| ||||| |||| | || || | | || | Sbjct 2114291 CTTCTTTTTGATCCCACTGCATCAATTTCATCAATAAAAACTATGCAAGGTGCGTGTTTT 2114232 Query 289078 CTCGCAA-TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 | || ||| ||| | |||||||| | ||| |||| |||||| |||||||| | Sbjct 2114231 TTTGCTGCTTGGAAA-AGTTCTCTTATCCTTCTTGCACCAACCCCAACAAACATTTCTTC 2114173 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 |||||| ||| | || |||| | || | ||||||||||| ||||||| || || || Sbjct 2114172 AAATTCGGAACCTGAAGCTTGGAGAAAAGGAACATTTGCTTCTCCTGCTATGGCTCTAGC 2114113 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTG 289255 | | ||| || |||||||| ||| || ||||| | ||||||| |||| ||| | Sbjct 2114112 AATTAATGTTTTTCCTGTTCCCGGTTCCCCAGATAATA-ATATCCCTTTAGGTAGTTTGG 2114054 Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 | || || |||| || | | |||||| | || | ||| || || ||||| | Sbjct 2114053 CACCTATTTTTGTAAATTTATCTGAATTTTTTAAATAATCAATAATCTCTTCTAGTTCTT 2113994 Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||| | |||||||| ||| |||||| ||||| |||| Sbjct 2113993 GCTTTACTTCATCACAGCCTTTTACATCTGCAAAGGTAA 2113955 >seq5 Length=1204002 Score = 95.1 bits (104), Expect = 4e-14 Identities = 235/350 (67%), Gaps = 15/350 (4%) Strand=Plus/Plus Query 381028 GAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATTAT 381087 |||| | |||| | || |||||||| || |||||||||||||| ||| || || ||| Sbjct 865941 GAAGTAAATGATTTAGGGCCTATTTATGGTTTTCAGTGGAGACACTTTGGTGCTGAATAT 866000 Query 381088 GATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATAGA 381146 | || | || || | |||||| | || || || || || |||||| || | || || Sbjct 866001 -ACAAATATGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATGTGATTGA 866059 Query 381147 CCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGAATCC 381206 |||| ||| ||| ||| | | | || | ||| || ||| |||||| Sbjct 866060 TTTAATAAAGAAT---GAACCAACTAGTA---GGAGAATTATTTTGTGTGCATGGAATG- 866112 Query 381207 TTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATGTT 381264 | ||||| | | | ||||| ||||||||||| |||||||||||||| || ||||| Sbjct 866113 -TAAAAGATTTAGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATGTT 866171 Query 381265 TCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTGGGT 381324 | | ||| ||| ||| ||| | | ||||| | | ||||| | ||| | || Sbjct 866172 TTTGATGG---TAAATTATCATGTATTATGTATCAAAGATCCTGTGATTTGGGTTTAGGA 866228 Query 381325 GTTCCATTCAATATTGCTTCGTATTCTATGCTTACTCGTTTAATTGCTCA 381374 ||||| || || ||||| || ||||| || | || | | | ||||| || Sbjct 866229 GTTCCCTTTAACATTGCCTCTTATTCCATTTTCACACATATGATTGCACA 866278 >seq4 Length=941946 Score = 84.2 bits (92), Expect = 6e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 252550 TTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGA 252609 ||||||||||| ||||| | || || |||||||||||||||||||||||||| | ||| Sbjct 272169 TTTGTAACATAAATACCCATAGCTTGTTTTCCCATAGCACTCTGGTAAGTATTACGTGGA 272228 Query 252610 GACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-ACACCGAAGA-TAGTGCTTG 252667 ||||| | || || |||||| ||||| ||| ||||| || | ||| | | Sbjct 272229 CTTTGATTATGATCACTAAATGGAATGATAGATGC-ACAGACACCTAATATTAGAG-AAG 272286 Query 252668 GGTGAATTTCACAGTGACTGTA 252689 | ||||||||||| ||| |||| Sbjct 272287 GATGAATTTCACAATGAGTGTA 272308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471803588756391