Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq11 102 7e-17 >seq13 Length=2538962 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || |||| || ||||| || || || || || || | | Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || ||||| ||||||||||| || || || || Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || ||||| | || ||| |||| | ||||||||||| Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAAT 759131 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || |||| || || Sbjct 759132 ATCCAAAAGGAATCTACTTTACATTTAGT 759160 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| || || || || || || | | || ||| | |||| || || || Sbjct 758751 GGAAAAACCATCACACTGGACGTTGAGTCATCAGATACAATTGAAAACGTCAAGGCTAAA 758810 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || ||||| ||||||||||| || || || || ||| | || || ||||| || ||||| Sbjct 758811 ATACAAGATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAAACAA 758870 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 | || ||| |||| | ||||||||||| || ||||||||||| || |||| || Sbjct 758871 TTAGAAGATGGAAGAACATTATCAGATTATAATATCCAAAAGGAATCAACTTTACATTTA 758930 Query 24911 GT 24912 || Sbjct 758931 GT 758932 >seq11 Length=2227116 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||||| ||||| || || || || || || | | Sbjct 206465 ATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCATCT 206524 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| ||||| || ||||| || |||||||| || |||||||| Sbjct 206525 GATACGATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAGGAAGGAATTCCACCCGATCA 206583 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | || || ||||| || ||||| || || ||| |||| | | || ||||| Sbjct 206584 ACAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTATAA 206643 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| ||||| || || |||| ||||| Sbjct 206644 CATTCAGAAGGAGTCCACTTTACATTTGGT 206673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893421576040