Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq13 179 6e-40 seq11 156 7e-33 >seq13 Length=2538962 Score = 179 bits (198), Expect = 6e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || |||| || |||||||||||||| || || | || || || ||| | Sbjct 758953 TGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA- 759011 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||| || || |||||||||| ||||||||| |||||||| || || Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| ||||||||||| ||| ||||| ||| ||||||||||| Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAAT 759131 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||| ||||| ||| | |||||||| | || |||||||| ||| Sbjct 759132 ATCCAAAAGGAATCTACTTTACATTTAGTTCTCCGTTTAAGAGGTGGT 759179 Score = 165 bits (182), Expect = 1e-35 Identities = 161/205 (79%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAAT 146114 |||||||||| || || | || || || ||| | ||||| ||| |||| || || | Sbjct 758749 CAGGAAAAACCATCACACTGGACGTTGAGTCATCA-GATACAATTGAAAACGTCAAGGCT 758807 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 ||||||||| ||||||||| |||||||| || || |||||| | || |||||||| ||| Sbjct 758808 AAAATACAAGATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAAA 758867 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 |||||||| ||| ||||| ||| ||||||||||||| ||||| ||||| ||| | ||| Sbjct 758868 CAATTAGAAGATGGAAGAACATTATCAGATTATAATATCCAAAAGGAATCAACTTTACAT 758927 Query 146235 TTAGTATTACGATTAAGAGGAGGTA 146259 ||||| | || |||||||| |||| Sbjct 758928 TTAGTTCTCCGTTTAAGAGGTGGTA 758952 >seq11 Length=2227116 Score = 156 bits (172), Expect = 7e-33 Identities = 164/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||||||| ||||||||||||| |||||||| || || ||||||| || ||| Sbjct 206466 TGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCAT-CT 206524 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || ||||| ||| ||| ||||| ||||||||||||||| Sbjct 206525 GATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAGGAAGGAATTCCACCCGATCAA 206584 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || |||||||| |||||| |||| ||| ||||| ||| | || ||||| Sbjct 206585 CAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTATAAC 206644 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTA 146243 || || || || || ||| | ||||| ||| || Sbjct 206645 ATTCAGAAGGAGTCCACTTTACATTTGGTAATA 206677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786159098479560