Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 seq4 96.9 4e-15 seq13 82.4 1e-10 >seq5 Length=1204002 Score = 120 bits (132), Expect = 4e-22 Identities = 322/484 (67%), Gaps = 25/484 (5%) Strand=Plus/Plus Query 168642 GAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCT 168701 || ||| ||| | ||||||||| || |||||||| ||||| |||||||| || ||| Sbjct 865935 GATAGAGAAGTAAATGATTTAGGGCCTATTTATGGTTTTCAGTGGAGACACTTTGGTGCT 865994 Query 168702 CAATATATTGAC-TG--TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAA 168758 |||||| | || ||||| |||| | | ||||||| || ||||||| || Sbjct 865995 GAATATACAAATATGCATGATA---ATTATAAAGACAAAGGAGTTGATCAATTAA---AA 866048 Query 168759 ACTATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGG 168815 | | | | | |||| || ||| || ||| || | | | ||| || ||| Sbjct 866049 AATGTGATTGATTTAATAAAGAATGAACCAACTAGTAGGAGAATTATTTTGTGTGCATGG 866108 Query 168816 GATGTACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTAT 168875 ||||| | | | |||||||||| | || |||||||| | |||| ||||||||| Sbjct 866109 AATGTAAAAGATTTAGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTAT 866168 Query 168876 GTA----AGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGG 168931 || | | ||| | ||| | ||| | |||||||||||| |||||| || Sbjct 866169 GTTTTTGATGGTAAATT--ATCATGTATTAT-----GTATCAAAGATCCTGTGATTTGGG 866221 Query 168932 ATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATG 168991 |||||||| || | ||| |||| | |||||| |||| |||| | || | | | | | Sbjct 866222 TTTAGGAGTTCCCTTTAACATTGCCTCTTATTCCATTTTCACACATATGAT-TGCACAGG 866280 Query 168992 -GTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAA 169050 ||||||||| |||| | |||| || || | ||| ||| ||| ||| |||||| | Sbjct 866281 TATGTAATTTGCAACCTGCACAGTTCATACACATTTTGGGAAATGCTCATGTGTATAATA 866340 Query 169051 ACCATGTTGAACCTTTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTA 169110 |||| || || ||||| ||||| || |||| ||| ||| | || |||| ||| Sbjct 866341 ACCACGTAGACAGCTTAAAAACACAATTAAACAGAATACCGTATCCATTCCCAACACTTA 866400 Query 169111 AATT 169114 |||| Sbjct 866401 AATT 866404 >seq4 Length=941946 Score = 96.9 bits (106), Expect = 4e-15 Identities = 129/174 (74%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 193786 AAAAT--AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGA 193843 ||||| ||||| |||||||||||||| |||||||| | | ||||||||||| | || Sbjct 270854 AAAATCAAAAATATTTATAGGGCCAACATATTATCAAAGATTAAAACATATGGTGGAAGA 270795 Query 193844 TAAAATGCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTG 193902 ||||| ||||| |||||| || | | | |||| |||| |||||||||| | Sbjct 270794 CAAAATACATGCAAGAAGTAGAGGTCCATTAACTATGATTAC-GCGACAACCAACAGAAG 270736 Query 193903 GTCGTTCTCAAGG--TGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTAT 193954 | | |||||| ||| ||| | ||||||||||||||||| | ||| ||||| Sbjct 270735 GAAG--ATCAAGGGATGGGGGTCTTAGATTTGGAGAAATGGAAAGAGATTGTAT 270684 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193019 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTAT 193078 |||||| ||||| |||||||| || || || || || |||||||||||||| ||| | Sbjct 272063 TGGTATAAATGCCATTGTTGCAATTATGTGTTACACAGGATATAATCAAGAAGATAGTCT 272004 Query 193079 TATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAACTTATAATACATA 193138 ||| | ||| | |||||||||| ||||| | ||| | | | || |||| |||||| Sbjct 272003 TATAATGAATCAGTCTTCTATTGATAGAGGTCTCTTTAGAAGTGTATTTTATCGTACATA 271944 Query 193139 TACAGTTGAAGAAACAAAAAATGGAA 193164 ||| |||||||| | || | |||| Sbjct 271943 CACAAGTGAAGAAAAACAACAAGGAA 271918 >seq13 Length=2538962 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 193453 TAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCA 193511 |||| ||||||||| ||||| || |||| | |||||||| |||| || ||| | | Sbjct 484758 TAGGCGATAAATTTAGTTCAAGGCATGGTC-AAAAAGGAGTGGTTGGTTTG--TTAGTAA 484702 Query 193512 --CAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAA 193569 |||||||||||||||||||||| ||||| || |||||| | ||||| || ||| Sbjct 484701 ATCAAGAAGATATGCCATTTACAGAATCAGGCATATGTCCAGATTTAATTATGAACCCAC 484642 Query 193570 ATTGTATTCCATCCAGAATGAC 193591 || | | ||||| ||||||| Sbjct 484641 ATGGATTCCCATCTCGAATGAC 484620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635171700788040