Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq4 100 4e-16 seq13 89.7 7e-13 >seq4 Length=941946 Score = 100 bits (110), Expect = 4e-16 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 201918 AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 201977 ||||| |||||||| |||||||| ||||| | | ||||||||||| | || ||||| Sbjct 270847 AAAATATTTATAGGGCCAACATATTATCAAAGATTAAAACATATGGTGGAAGACAAAATA 270788 Query 201978 CATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGTC 202036 ||||| |||||| |||| | |||| | ||||| || ||||||| || | | Sbjct 270787 CATGCAAGAAGTAGAGGTCCATTAACTATGATTAC-GCGACAACCAACAGAAGGAAGAT- 270730 Query 202037 CCAAGG--TGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 ||||| ||| || | ||||||||||||||||||| ||||||||| Sbjct 270729 -CAAGGGATGGGGGTCTTAGATTTGGAGAAATGGAAAGAGATTGTAT 270684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 |||||| ||||| ||||| |||||| |||||||| ||||| ||||||||||||||| | Sbjct 272063 TGGTATAAATGCCATTGTTGCAATTATGTGTTACACAGGATATAATCAAGAAGATAGTCT 272004 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGT 201236 ||| | ||| | | |||||||| |||||| Sbjct 272003 TATAATGAATCAGTCTTCTATTGATAGAGGT 271973 >seq13 Length=2538962 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| ||||| ||| | ||||||||| || || || | || ||| | ||||| ||| Sbjct 1010857 TAAAGTTGCACAGCTTGTTGGTTACATAGCGGAGCATAGTGCATATCATCATGGAGAATC 1010916 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | || ||||||| || || | || ||| |||||| || | ||||| |||| Sbjct 1010917 ATCTCTACAACAAACTATTATTAACATGGCGCAGACTTTTGTTGGGTCTAATAATATAAA 1010976 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| ||| || ||||||| ||| || ||||| |||||| || | || Sbjct 1010977 CTTTTTAGAACCATGTGGGCAATTTGGTAGCAGAAAAGAGGGAGGAAAAGATGCATCTGC 1011036 Query 173068 ATCAAGGTATATTTATACTAAA 173089 | |||||||||||| ||| ||| Sbjct 1011037 AGCAAGGTATATTTTTACAAAA 1011058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655273914087000