Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 5e-14 seq8 84.2 3e-11 >seq4 Length=941946 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/182 (74%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 193332 AAAAT-TGAAAAT--AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATG 193388 ||||| | ||||| ||||| |||||||||||||| ||||| || | | ||||| ||| Sbjct 270862 AAAATGTTAAAATCAAAAATATTTATAGGGCCAACATATTATCAAAGATTAAAACATATG 270803 Query 193389 GTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACC 193447 || | || ||||| ||||| |||||| || | | | |||| |||| |||||||| Sbjct 270802 GTGGAAGACAAAATACATGCAAGAAGTAGAGGTCCATTAACTATGATTAC-GCGACAACC 270744 Query 193448 AAATTGTGGTCGTTCTCAAGG--TGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGT 193505 || || | |||||| ||| ||| | ||||||||||||||||||| ||| ||| Sbjct 270743 AACAGAAGGAAG--ATCAAGGGATGGGGGTCTTAGATTTGGAGAAATGGAAAGAGATTGT 270686 Query 193506 AT 193507 || Sbjct 270685 AT 270684 >seq8 Length=1849747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 50406 AACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGA 50465 ||| |||| | | ||||||||| | ||| |||||||||| |||||||||||||| || Sbjct 1051054 AACTTTTAGATTAAATTTAGCTGTTACTTCTCCATATAATGCCGATTTTGATGGGGACGA 1050995 Query 50466 AATGAATTTACATGTTCCTCAATCATATG 50494 ||||||||||||| | | |||||| ||| Sbjct 1050994 AATGAATTTACATCTGGCACAATCACATG 1050966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628525362516480