Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 4e-14 seq11 84.2 2e-11 >seq13 Length=2538962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 222/335 (66%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 151505 TCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGA 151564 |||||||| | | | || | | |||||| || ||||| | || ||| | | | ||| Sbjct 814872 TCCTCATATTTTGTATATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGA 814813 Query 151565 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 151624 ||||| || ||||||||||| | ||| | ||||||| ||| | ||||||||| | | Sbjct 814812 CACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGA 814753 Query 151625 TCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 151684 || |||||||| | || | | | ||| || ||| | ||||| | ||| ||| Sbjct 814752 TCTGGAACCCACACAGCATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTT 814693 Query 151685 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 151744 | | | ||||| || | |||||| ||||||| ||||||| ||| || || Sbjct 814692 TTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAA 814633 Query 151745 GCGCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 151801 | ||||||| || || |||||||| || | | | ||| ||| || |||| Sbjct 814632 GATCCTTTTCTTTTCCCTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTT 814573 Query 151802 AGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 151836 ||||| |||| | |||| ||| | || ||||| Sbjct 814572 AGCATAGGTACTAATCCGTTGGATATTCCATTCGT 814538 >seq11 Length=2227116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||| | || || || || || ||||| || || ||| || || || ||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAAT-GTTCTGCCATCTTC 206615 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||||| || ||| | || | | || |||||||| || || ||||| || || Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||||||| || | | || | ||| || | | || || |||| || | || || Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||||||||||||||||||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCAT 206465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488539462647600