Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq13 178 3e-39 seq11 167 5e-36 >seq13 Length=2538962 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| ||||| |||||||| || | ||||||||| || || ||||||||||| || Sbjct 759179 ACCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGA 759120 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||||| ||||||||| ||||| |||| |||||| || || || || Sbjct 759119 TAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGG 759060 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| |||||||| || || || || || |||||||| || || | || || Sbjct 759059 AATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAAC 759000 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| || ||||||||||| || ||||| Sbjct 758999 GTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 156 bits (172), Expect = 8e-33 Identities = 136/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| ||||| |||||||| || | ||| ||||| || || ||||||||||| | Sbjct 758952 TACCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCTG 758893 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| ||||||||| ||||| |||| |||||| || || || | Sbjct 758892 ATAATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTG 758833 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | |||||||| |||||||| || || || || || |||||||| ||||| Sbjct 758832 GAATTCCTTCTTTATCTTGTATTTTAGCCTTGACGTTTTCAATTGTATC 758784 >seq11 Length=2227116 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || | ||| || || ||||| || ||||| |||| || |||| || |||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCT 206614 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||||||||| ||||| |||| ||| |||||||| || || |||||||||||||||||| Sbjct 206613 AGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGA 206554 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| || ||||| |||||||||||| | || || || | || || || || Sbjct 206553 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTT 206494 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || ||||| ||||| |||||| Sbjct 206493 CCGGTTAATGTTTTTACGAATATTTGCATT 206464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981817853311877