Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 109 1e-18 seq13 104 6e-17 seq12 100 7e-16 seq8 87.8 4e-12 seq1 86.0 1e-11 >seq5 Length=1204002 Score = 109 bits (120), Expect = 1e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 ||||||||||| ||||||||||||||||| || | |||||||||||| | ||| ||||| Sbjct 866170 ACATAAAATTGGCATAAAATATGACAAGGTGGTAATGCCATTTTATCTAAATCTTTTACA 866111 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATT-TTTAATAAGTTCTTCACA 59055 |||||||||| |||||||| | | | | || ||||| |||| ||| | |||| Sbjct 866110 TTCCATGCACACAAAATAATTCTCCTACTAGTTGGTTCATTCTTTATTAAATCAATCAC- 866052 Query 59056 ATGTTTTATTTGGTCAAATCCATT 59079 || ||||| ||| |||| ||| || Sbjct 866051 ATTTTTTAATTGATCAACTCCTTT 866028 >seq13 Length=2538962 Score = 104 bits (114), Expect = 6e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 |||||| |||||||||| || | |||||||||| || | || || ||| || || Sbjct 815156 ACAAAAATTATTACACGAAATTTGGATAAAATTATAGAAAGAAATTATTACCCAGTTGAA 815215 Query 112641 AAAGCAAAACATTCTAATAACAAG-CATAGACCAATTGGCATTGGCGTACAAGGATTAGC 112699 |||| | | || |||| |||| ||||||||||| || || || || |||||||| || Sbjct 815216 GAAGCTAGAAGATCCAATA-CAAGACATAGACCAATAGGAATAGGGGTTCAAGGATTGGC 815274 Query 112700 TGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGA 112759 |||| |||||| | | || ||| | ||| || || ||||||| |||||| | Sbjct 815275 TGATACTTTTATGTTATTAAGATATCCCTATGAATCAGATTCTGCTAAAGAATTAAATAA 815334 Query 112760 AAAGATTTTCGAAACAATCTATTTCGCTGCTATG 112793 || ||||| ||||| || |||| |||||| || Sbjct 815335 AAGAATTTTTGAAACTATGTATTATGCTGCTTTG 815368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 113658 GTATCACCAGAGTCATCAAGTAAAGTAAGGAAATGTTCTTCAGATATGTCTAATAGTGTA 113717 || || ||| ||||| |||||| | || |||| ||||||| || || | || | Sbjct 370294 GTCTCTCCATTGTCATGAAGTAATGAAACGAAACCATCTTCAGTAATATCGATTAATTGC 370353 Query 113718 TATTCTTTTTTATCAATTATAGGTACATATATGTTATGCGTCGAAGTTTCAATCAT---T 113774 ||||| || | | | | |||||||| || ||||| | | ||| | || | Sbjct 370354 AATTCTGTTCTTTTGACAACAGGTACATCCATATTATGTG---ATGTTGGACATATATCT 370410 Query 113775 TCATACttttttttCGTAAAAATATCTGTCGCAACAAAATGACACTTTGCATGACCATGT 113834 ||||| ||||| ||| |||||||| | | |||| || ||||||||||||||| Sbjct 370411 TCATATTTTTTCCCCGTGAAAATATCAATACCTACAATGTGTGCTTTTGCATGACCATGT 370470 Query 113835 TTTCCAGTTTTTGATGTTG-ATATGGAATTTACTTTACACGGACGATTCTT 113884 ||||||||||||||||||| ||| || ||||||||| ||| | | ||| Sbjct 370471 TTTCCAGTTTTTGATGTTGAATAATCAA-CTACTTTACATGGATGTTCCTT 370520 >seq12 Length=3573180 Score = 100 bits (110), Expect = 7e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| || |||||||| ||||| |||||| || ||| |||||||| | |||| | Sbjct 1313838 TTCAACAGACAACCATCCCTGCACCGAATGTCCATTATGAGTCATAAAGCAAGAGTAATG 1313897 Query 305396 TCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | || | ||||||| || || | | ||| || | || |||||||| ||||| || Sbjct 1313898 AA-GTATAAAACATTTCGTTTTAACGAATGTGTGTGCTCCCCATATAATGCTGATTTCGA 1313956 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||||||| |||||||||| ||| || Sbjct 1313957 TGGAGATGAAATGAATTTGCATGTACCACAAACA 1313990 >seq8 Length=1849747 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||||| || || |||||| ||| |||| ||||| | ||| |||| Sbjct 1051122 TTCAATCGACAACCATCTCTTCACAAAATGAGTATTATGGGACATAAGGCTAAAATATTG 1051063 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 | | || ||| |||||||| || || | | | || |||||||| ||||||||| Sbjct 1051062 CCATATTCAACTTTTAGATTAAATTTAGCTGTTACTTCTCCATATAATGCCGATTTTGAT 1051003 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATCA 305488 || || ||||||||| | ||| | | |||||| Sbjct 1051002 GGGGACGAAATGAATTTACATCTGGCACAATCA 1050970 >seq1 Length=977776 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 72240 ATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAATGCTTTAATAA 72299 ||||| | ||| || |||||||||| | || ||| ||| ||| |||| Sbjct 711379 ATTTGTGTTAGGTCCACTGTTAGCCATACTTAATAATCCTTCTTTGTCATGTTTTATGTC 711438 Query 72300 GAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGTT 72359 ||||| |||||||||||| |||| ||||| || ||| | | ||||||| | |||| Sbjct 711439 AAAATTTTCATCTTCAAAATTTTCCCCATAAATGCTTAAGCTTCCACTTCCATTATAGTT 711498 Query 72360 CACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAAAG 72409 ||| | ||| || || || | |||||| | || |||||||||||||||| Sbjct 711499 CACGAAATCCCCACCCTGTATCATAAACTCTTTTATTACTCTATGGAAAG 711548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801501913023