Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 seq13 82.4 7e-11 >seq11 Length=2227116 Score = 113 bits (124), Expect = 4e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || ||||||||||||||||||||| | ||||| | || |||| || Sbjct 206461 CAAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCG-AGT 206519 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || | ||||| || ||| | || || ||||||| ||||| || || || || |||| Sbjct 206520 CATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAGGAAGGAATTCCACCCG 206579 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GAT 25348 |||| || ||| | || | | || |||||||| ||||||| || || | ||| || Sbjct 206580 ATCAACAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAG-AACATTAGCTGAC 206638 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || ||||| || || ||||| | ||||| || Sbjct 206639 TATAACATTCAGAAGGAGTCCACTTTACATTTGGT 206673 >seq13 Length=2538962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 137827 CCCGGACACTCGTCGGGACACATCAACGACCA--TTTTCCTCCCGTCCTAACCCTTTCCA 137884 || |||||||| | |||||||| || | ||| |||| | | | |||| |||| || Sbjct 814818 CCTGGACACTCATTTGGACACATTAAAGTCCAATTTTTATTTTCTT--TAACTCTTTTCA 814761 Query 137885 TGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGC-CTTCATATCTTCGGCG 137943 | || ||| || ||| | |||| | | ||| || ||||| ||| || ||||| Sbjct 814760 TAAAAAGATCTGGAACCCACACAGCATAGAAAAGATCTCGAGCTCTTAAT-TCTTCTTTT 814702 Query 137944 CCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAG 138003 || ||| | ||||||| ||||| |||||| |||| |||||| || || || || Sbjct 814701 CCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAATGTAT 814642 Query 138004 ACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACAT 138043 || || | || |||||||||||| || |||||||| |||| Sbjct 814641 ACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTTGATCTACAT 814599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090266185760