Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13 412 5e-110 >seq13 Length=2538962 Score = 412 bits (456), Expect = 5e-110 Identities = 987/1464 (67%), Gaps = 59/1464 (4%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAG--ATAACAC-TCTACGAGT-GTAAAT 68753 || ||||| |||||||||| |||||| ||| | ||||| ||| || ||| || Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCT----GTAGTAGAT 815621 Query 68754 ATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGT 68813 ||||| ||||||||||| | ||||||||||||||||||||||| | ||| |||||||| Sbjct 815620 GTTACTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGT 815561 Query 68814 TGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAG 68873 |||||| || |||| | ||| ||| || | |||||| | | |||||| ||||| Sbjct 815560 TGGCATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAG 815501 Query 68874 ATGTTTCCAATCCCAAAGATCAGATGGTAC---AACATTCCAAAGATCGTATTGTAGAAT 68930 | | ||||| |||| | | || |||||||| | || |||||| ||| Sbjct 815500 TTCATCCCAATTCCAATATTTATTATCAACCTTTACATTCCACATGTCAAATTGTAAAAT 815441 Query 68931 TCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT- 68989 ||| | ||| || || | |||||||||||||||||| | | || ||| | || Sbjct 815440 TCCTTGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTTGAGCCAATTC 815381 Query 68990 CACA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || | || | || || ||| | ||||| || ||||| ||||| | ||||| | ||| Sbjct 815380 CATAGACAT--TTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCT 815323 Query 69049 TGTGC---TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 | || ||| || || | ||||| ||| | ||||| | ||| |||||||| Sbjct 815322 TTAGCAGAATCT-GA--TTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCT 815266 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 |||||||| || || || ||||||||||| |||| || ||| ||||||| || || Sbjct 815265 TGAACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGG 815206 Query 69166 TAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT 69225 |||||||| | ||||||||||||| | |||||| | | ||| | | | Sbjct 815205 TAATAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAA 815146 Query 69226 AGTTTGAGAAAATCAAA-TCGTCCATCTAT-----AACAAACATATTCAGTGCTACAGAT 69279 ||||| ||||| ||| || | ||| | ||||| | | ||||| |||| Sbjct 815145 AGTTTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGAT 815086 Query 69280 GCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGA 69339 || |||||||| || || || |||| || | || |||| || ||||| ||||| Sbjct 815085 GCCAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAG 815026 Query 69340 TTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTG 69399 ||||||||||| ||||| || | ||||| |||||| || ||||| | || || Sbjct 815025 TTACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTA 814966 Query 69400 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC---G 69456 ||||| || | || ||| ||||| |||| | || ||||| | ||||| Sbjct 814965 TAAAGCATGTAAGGGACACCTGTTTCTATCT--GGCTCTGTAATA---TAGCAAACCATA 814911 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGC 69513 | || | || || || || | | | || |||| ||||||| |||||||| | Sbjct 814910 AATCTTG-TGCTAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAAC 814852 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAAT 69573 ||| ||||| || ||||| || || || ||||| |||||||||||||| || Sbjct 814851 TTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAA 814792 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 | ||| | || || ||||||| ||||||||| ||||| |||| ||| | ||| ||| Sbjct 814791 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGC-ATA 814733 Query 69634 -AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 || ||||||| | ||| |||||| ||||| ||||||| | | ||| | ||| || Sbjct 814732 GAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTC 814673 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | ||| ||||||||||||||||| | |||| || | ||| || ||| ||| Sbjct 814672 AAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCC 814613 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG-AATAATACCAT 69811 ||| ||||||| ||||| ||||| | ||| | ||||| ||||| || | |||| || | Sbjct 814612 TCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGT 814554 Query 69812 TAGATTTACCATTTGTTCCAGAAATATA--ACTT----CCTCTTGCGCGAATATTACTAA 69865 | ||| | ||||| ||||| |||||| | || |||||| |||| | Sbjct 814553 TGGATATTCCATTCGTTCCTCTAATATATGAATTTTGACCTCTT------ATATCTTGCA 814500 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 | | || || || || || |||| |||| ||||| |||||||||| || Sbjct 814499 CTGCAACTCCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGA 814440 Query 69926 ATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGA 69984 | || || ||||| ||| | ||| || ||| || |||||| ||||||||| | Sbjct 814439 AAATTCCTTCTATCGAATCTGATTTCATTGATAATAA-AAAACACGAAGACATTTGTGGT 814381 Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044 | |||||| | ||| ||||||||||||| ||| || ||||| |||| | || | Sbjct 814380 CTTGGAGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATT 814321 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACG 70103 | | |||||||||| ||| ||| | ||| || | ||| ||||| || | || | Sbjct 814320 AAGTGATATGTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCT 814262 Query 70104 CATCAACATATGCTGAGGTCGTTC 70127 ||| |||| ||| || |||| ||| Sbjct 814261 CATTAACAAATGTTGTGGTCTTTC 814238 Score = 215 bits (238), Expect = 7e-51 Identities = 383/552 (69%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| || ||||||| |||||| ||||| ||| ||||| | |||| | | | Sbjct 2310263 TGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCCATGTAACTTATTT 2310204 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 ||||||| | ||||||||| ||| ||| |||| ||| || || |||||||| | Sbjct 2310203 TGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAAAATTCCTTCTACGCAT 2310144 Query 39752 GCAAATGCAACAAGTCTCTCTCC---GTAACTTGTATCATTATGTATCCACTTCTGTGCC 39808 ||| ||| || | || ||| | | || | |||||||| |||||| || |||| Sbjct 2310143 GCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTATCATT---TATCCATTTGGCTGCC 2310087 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AATGTT 39866 || ||||| || |||||| || || |||||||||||| ||| | || ||| || Sbjct 2310086 CATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATGAAATAAATTCAATCTT 2310027 Query 39867 T-TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 | || ||| || || | || |||| ||||| | ||| || |||| ||||| || Sbjct 2310026 TCTTTTTCA---TCCTTTATGTAATTATCAATTAATAAACTGTATGTTTCGGAATGTATA 2309970 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 ||||||| || || ||||| ||||| | |||| || |||||||| || | | Sbjct 2309969 TTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAATTTGAACTTGTCGT 2309910 Query 39986 CAAAATCTTTCC-GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAA 40044 |||| ||| | || |||||||| || ||||||||||| || ||||||||||| || Sbjct 2309909 AAAAA-CTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTGCAAAAAATGCTAA 2309851 Query 40045 TACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTT 40104 |||||||| ||||||| ||||||| | ||||| | | || || | ||| | Sbjct 2309850 AACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCACT 2309791 Query 40105 TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 |||| ||||| ||| || ||||||||||| || || ||||| ||||| || | | ||| Sbjct 2309790 CGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTTTATAAAAATCCCA 2309731 Query 40165 TATATCACGATA 40176 | ||| |||| Sbjct 2309730 CACATCTGGATA 2309719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902420334520