Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13 181 8e-41 seq8 161 8e-35 seq5 158 1e-33 >seq13 Length=2538962 Score = 181 bits (200), Expect = 8e-41 Identities = 360/527 (68%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 43742 TACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA 43801 || ||||||||| | || |||||||||||||| || ||| | ||||| | | || ||| Sbjct 2309740 TATAAAAAAGCAGAAGCATCATTTTGGACAGCGGAGGAAATAGATTTATCGAGTGATTTA 2309799 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 | ||| |||||| | ||||| ||||||||| ||||| || ||| Sbjct 2309800 AAAGATTTCGAAAAATTAAATGATAATGAAAAGCATTTTATAAAACATGTTTTAGCATTT 2309859 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921 ||||| || || || || || || |||||||| | |||| |||| | | ||||| Sbjct 2309860 TTTGCAGCAAGTGATGGAATTGTTTTGGAAAATTTAGCTAGTAAGTTTTTACGACAAGTT 2309919 Query 43922 CAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCG 43981 ||| | |||| ||| | |||||| |||||||| || | |||||||| ||||| Sbjct 2309920 CAAATTACAGAGGCAAAAAAATTTTATTCTTTTCAAATAGCTGTTGAAAATATACATTCC 2309979 Query 43982 GAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA--T 44039 |||| |||||| | | || |||| ||||| || |||| | || ||| || || | Sbjct 2309980 GAAACATACAGTTTATTAATTGATAATTACATAAAGGATGAAAAAGA-AAG-ATTGAATT 2310037 Query 44040 TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 | ||| |||| ||||||| |||| || | ||| |||||||| ||||| |||| Sbjct 2310038 TATTTCATGCTATAGAAAATATACCAGCTGTAAAAAATAAAGCATTATGGGCAGCCAAAT 2310097 Query 44100 GGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCA 44159 |||||||| | | |||| |||| |||| | | || || |||| || ||||| | Sbjct 2310098 GGATAAATGATACTAATTCCTTTGCAGAAAGGATAGTGGCAAATGCATGCGTAGAAGGAA 2310157 Query 44160 TTTTCTTTTCAGGATCGTTTGCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 |||| ||| ||| |||| | || ||||||||||| || || | | | | | | | Sbjct 2310158 TTTTATTTAGTGGA-AGTTTCTGTGCAATATTTTGGTTTAAAAAGCAAAATAAGTTACAT 2310216 Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 || ||||| || ||||| || || ||||| |||||||| |||| Sbjct 2310217 GGATTGACATTCAGTAATGAATTGATTAGTCGAGATGAAGGACTACA 2310263 >seq8 Length=1849747 Score = 161 bits (178), Expect = 8e-35 Identities = 346/512 (68%), Gaps = 25/512 (5%) Strand=Plus/Plus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || ||||| || || |||||||| |||||| | | |||||||| || ||| | Sbjct 1750482 ATAAAACAGTTAGGTATAAAACATGTGAAAGGACTTATATTATATGGGCCCCCTGGTACT 1750541 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAA---ATTACTTACAAAACAACCTCCCAAA 19434 || ||||||||||| || ||| | | | || ||| | || | ||||| ||| Sbjct 1750542 GGTAAAACATTAATAGCTAGACAGATAGGAAAAACATTGAATGCACGAGAACCT---AAA 1750598 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 ||| | ||||| || ||||| |||||||| ||||| || ||||| |||||||| | ||| Sbjct 1750599 ATTATTAATGGCCCAGAAATATTAAATAAGTATGTGGGACAATCAGAAGAAAACATCCGA 1750658 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC---TTTG 19551 || ||| || || ||| |||| | |||| | | | ||| ||| ||| Sbjct 1750659 AACTTATTTAAAGATGCGGAACTAGAATATAAAC---AAAGTGGTGAAAATTCACTTTTA 1750715 Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCT 19602 |||||||| || | |||||| | || ||||||||| || ||||| ||| Sbjct 1750716 CACATTATCATTTTGGATGAAATAGATGCAATCTGTCGACAGAGAGGTAGCGCCGCTTCA 1750775 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | |||||| |||||| | |||| ||||| | || |||||| | || |||||| Sbjct 1750776 AGTGGTACAGGAGTAAATGACAGTATTGTGAATCAGTTGCTATCAAAAATTGATGGTGTT 1750835 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 || |||||||||| || | ||||| ||||| || ||| | || ||||| || Sbjct 1750836 AATAGTTTGAATAATATCCTACTAATTGGAATGACAAACAGAATTGATTTAATTGATGAT 1750895 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAAT-TAACTTACCCGATGAATG 19781 || || || |||| ||| | || ||| || | || ||||| | ||| |||| || | Sbjct 1750896 GCTTTGTTGAGACCTGGTAGATTCGAATTACACATAGAAATATCCCTT--CCGAATAAGG 1750953 Query 19782 -TGGACGTGTGGAAATTTTAAACATACATACA 19812 ||| | | |||||||||| || |||||| Sbjct 1750954 AAGGAAGAATTCAAATTTTAAATATTCATACA 1750985 >seq5 Length=1204002 Score = 158 bits (174), Expect = 1e-33 Identities = 339/504 (67%), Gaps = 6/504 (1%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || | | |||| | || ||| ||||||| ||||||| | |||| ||||| || Sbjct 865935 GATAGAGAAGTAAATGATTTAGGGCCTATTTATGGTTTTCAGTGGAGACACTTTGGTGCT 865994 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 ||||| | |||| | | |||||| | |||||| | ||||||||| | || Sbjct 865995 GAATATACAAATATGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATGTG 866054 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 || ||| || || || || ||| | | || || ||||| || ||||| | Sbjct 866055 ATTGATTTAATAAAGAATGAACCAACTAGTAGGAGAATTATTTTGTGTGCATGGAATGTA 866114 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | || || || |||||||| |||||||||||| | ||||| || ||||| |||| Sbjct 866115 AAAGATTTAGATAAAATGGCATTACCACCTTGTCATATTTTATGCCAATTTTATGTTTTT 866174 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 ||||| || | |||||| ||||||||||||| |||| |||| |||| || || Sbjct 866175 GATGGTAAATTATCATGTATTATGTATCAAAGATCCTGTGATTTGGGTTTAGGAGTTCCC 866234 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 |||||||| || |||| | | |||| ||||||||||||| || ||||| || Sbjct 866235 TTTAACATTGCCTCTTATTCCATTTTCACACATATGATTGCACAGGTATGTAATTTGCAA 866294 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 |||| | || | |||| || ||| ||| ||| | || | ||| ||| |||| Sbjct 866295 CCTGCACAGTTCATACACATTTTGGGAAATGCTCATGTGTATAATAACCACGTAGACAGC 866354 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTT--ATTAAA-CGC 41330 |||| | |||| | | ||| ||| ||||| ||||| |||| |||||| | Sbjct 866355 TTAAAAACACAATTAAACAGAATACCGTATCCATTCCCAAC---ACTTAAATTAAATCCA 866411 Query 41331 GCTGTTGAAAACATTGATGATTTT 41354 | | |||| ||||| |||||| Sbjct 866412 GACATAAAAAATATTGAAGATTTT 866435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452400911715