Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13 120 4e-22 >seq13 Length=2538962 Score = 120 bits (132), Expect = 4e-22 Identities = 736/1161 (63%), Gaps = 30/1161 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || |||||||||||| |||||||||| |||| ||||| | || || Sbjct 815626 GTAGATGTTACTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGA 815567 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || ||||||||||| |||| | || || | | | | || | | ||| || Sbjct 815566 TGCAGTTGGCATTGGAGCCAGAAGTAATGAAT--TCCTCAATCCATGTTTCTTTATTTTA 815509 Query 110825 TCCTTGAGAACATCCCAGTCGTAGT-----TGAGCTTGGTTTCACCTTCCCACATGTCAA 110879 ||| || ||||||| | | | | | | ||| || |||| ||||||||| Sbjct 815508 GTCTTTAGTTCATCCCAATTCCAATATTTATTATCAACCTTT-ACATTCC-ACATGTCAA 815451 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 | || | | ||||| || ||| ||||| | | |||||||| | || | ||| Sbjct 815450 ATTGTAAAATTCCTTGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTT 815391 Query 110940 CAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 |||||||| || || | |||| | || | |||||| |||||||| || | | Sbjct 815390 GAGCCAATTCCATAG-ACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTA 815332 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | || || || |||||| ||| | | || | | || ||||| ||| || Sbjct 815331 TTTAATTCTTTAGCAGAATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCC 815272 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 | |||||||| || | || || ||||| |||| |||| || ||| || ||| Sbjct 815271 AATCCTTGAACCCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCA 815212 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || ||| ||||||| || || | | | | |||| |||| ||| ||||| ||| Sbjct 815211 ACTGGGTAATAATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATT 815152 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGC 111237 | | |||||| | | ||| ||| ||||| || ||| | |||| | | || Sbjct 815151 TGGTAAAGTTTCTTAAAATTAAATTCTTTTTTCTCTGTATCTACA-AATTTGCATAATGC 815093 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 || ||||||| ||| || ||||| ||||| | |||||| || | ||| || Sbjct 815092 TATAGATGCCAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACA 815033 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 ||||||||| || || || || || ||||| || || || || || |||| Sbjct 815032 ACATAAGTTACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGA 814973 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG-AGAATAGCCTTCC 111416 ||| || || |||||||| || || || || |||| | | || | ||||| || Sbjct 814972 ATCTTTATAAAGCATGTAAGGGACACCTGTTTCTATCTG-GCTCTGTAATATAGCAAACC 814914 Query 111417 AAACATCGGCGGCTGGTACAATGGCGTTGGCCC---GTCCCTCCGCCTCGTACTTTGTGT 111473 | | ||| ||| | | || || ||| || || |||| || ||||| | Sbjct 814913 ATAAATCTTGTGCT--AAGACTGTTTTTTTCCCCATGT-TTTCTTCCTCATATTTTGTAT 814857 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | | |||||| || |||||| | ||| | ||||| || | |||||| | Sbjct 814856 ATAACTTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACA 814797 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 | || ||| | | ||| | ||| | ||||| ||||| ||||||| ||||| | Sbjct 814796 TTAAAGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAG 814737 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | || ||||||| | | ||||| | || || || || ||| || | | Sbjct 814736 CATAGAAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAA 814677 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GAC 111710 | || | || || | |||||||| |||| || || || | |||||| |||| | Sbjct 814676 ATTCAAAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCC 814617 Query 111711 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG-AATAATA 111769 || |||||| |||||| | || || | || ||||| | ||||| || | |||| Sbjct 814616 CTCCTCCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT- 814558 Query 111770 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 111829 || | ||| ||||| || || | |||| || || | |||| | ||| || | Sbjct 814557 CCGTTGGATATTCCATTCGTTCCTCTAATATATGAATTTTGACCTCTTATATCTTGCA-C 814499 Query 111830 TGCATC-CCAATACCCCCAGC 111849 |||| | |||||||| ||||| Sbjct 814498 TGCAACTCCAATACCACCAGC 814478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026167152800