Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 122 5e-23 seq13 107 1e-18 >seq11 Length=2227116 Score = 122 bits (134), Expect = 5e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | |||| |||||| ||||||||||| || | | ||||| | ||||| Sbjct 206673 ACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCT 206614 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || ||||||||||| | |||||| || || || | ||| ||||| ||| || Sbjct 206613 AGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCT-TG 206555 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||||| | ||| || || ||| || || | ||| || ||||| Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||||||| ||||| || || || ||||| ||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTTG 206461 >seq13 Length=2538962 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| | ||| |||||||| || ||||||||||| Sbjct 759178 CCACCTCTTAAACGGAGAACTAAATGTAAAGTAGATTCCTTTTGGATATTATAATCTGAT 759119 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||| || ||||||||||| | || ||||| || || Sbjct 759118 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGA 759059 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| || ||| | || ||| | |||||||||| ||| || Sbjct 759058 ATTCCTTCTTTATCT-TGTATTTTAGCCTTGACGTTTTCAATTGTGTCTGATGACTCAAC 759000 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || ||||| || || |||||||| ||||| Sbjct 758999 GTCTAGTGTGATGGTTTTTCCTGTTAAAGTCTTTACAAAAATTTGCAT 758952 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| | ||| |||||||| || ||||||||||| Sbjct 758950 CCACCTCTTAAACGGAGAACTAAATGTAAAGTTGATTCCTTTTGGATATTATAATCTGAT 758891 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||| || ||||||||||| | || ||||| || || Sbjct 758890 AATGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGCTGGTCAGGTGGA 758831 Query 34600 ACTCCCTCCTTGTCT 34614 | ||| || || ||| Sbjct 758830 ATTCCTTCTTTATCT 758816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726750025119