Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 134 9e-27 seq13 109 4e-19 >seq11 Length=2227116 Score = 134 bits (148), Expect = 9e-27 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| ||||| | || |||||||| ||||| || || || || || Sbjct 206462 AAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTTGATGTCGAGTCA 206521 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| |||||| || || || ||||| | || || || Sbjct 206522 TCTGATACGATTGAGAATGTTAAGGCAAAAA-TTCAAGATAAGGAAGGAATTCCACCCGA 206580 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | ||||||||||| || |||||||| ||||| | | || |||| || || Sbjct 206581 TCAACAGAGATTAATATTTGCAGGAAAACAACTAGAAGATGGCAGAACATTAGCTGACTA 206640 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| |||||||| || Sbjct 206641 TAACATTCAGAAGGAGTCCACTTTACATTTGGT 206673 >seq13 Length=2538962 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || |||||||| ||||| || || ||||| || | Sbjct 758952 ATGCAAATTTTTGTAAAGACTTTAACAGGAAAAACCATCACACTAGACGTTGAGTCATCA 759011 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| || |||||||| | || || || || Sbjct 759012 GACACAATTGAAAACGTCAAGGCTAAAATACAAGATAAAGAAGGAATTCCACCTGACCAG 759071 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||||||||| || |||||| | ||||| | | | || ||| ||||| || Sbjct 759072 CAAAGATTAATATTTGCAGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAAT 759131 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || |||||||||||| Sbjct 759132 ATCCAAAAGGAATCTACTTTACATTTAGTT 759161 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| ||||| || || ||||| || | || || |||||| | || ||| Sbjct 758751 GGAAAAACCATCACACTGGACGTTGAGTCATCAGATACAATTGAAAACGTCAAGGCTAAA 758810 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || || |||||||| | || || || || || | ||||||||||| || |||||| Sbjct 758811 ATACAAGATAAAGAAGGAATTCCACCTGACCAGCAAAGATTAATATTTGCAGGAAAACAA 758870 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 | ||||| | | | || ||| ||||| || || ||||| || || || ||||||||| Sbjct 758871 TTAGAAGATGGAAGAACATTATCAGATTATAATATCCAAAAGGAATCAACTTTACATTTA 758930 Query 23818 GTT 23820 ||| Sbjct 758931 GTT 758933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006539217444