Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11 114 3e-20 seq743 95.1 3e-14 seq4 84.2 5e-11 >seq11 Length=2227116 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || || || | || || || || || ||||| ||||||||||| || || || Sbjct 206662 AGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTCTAGTTGTTTTCC 206603 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 || || || | || ||||| ||||| ||||| |||||||| ||||| || ||| ||| Sbjct 206602 TGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTGAATTTTTGCCTT 206543 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || || || || | || || || | ||||| || || || || || || Sbjct 206542 AACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTTTCCGGTTAATGT 206483 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| ||| | ||||||||| Sbjct 206482 TTTTACGAATATTTGCATTTT 206462 >seq743 Length=34515 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| || | | ||| ||| |||||| |||||| |||||| ||| || || || Sbjct 777 TTGGTAAGGTTTATCGTGTTGCATCGAATTAAGCCACATGTTCCACCACTTGTATAAGCT 836 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTACGC 7854 |||||| || |||||| ||||| |||||| || ||||||||||||||||||| Sbjct 837 CCCGTCAATTCCTTTGAATTTTATTCTTGCGAATATACTACTCAGGTGGAATATTTA--- 893 Query 7855 GTTAGCTTAATTAATATA 7872 ||| ||| ||| |||| Sbjct 894 -TTACGTTAGTTATTATA 910 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| || | | ||| ||| |||||| |||||| |||||| ||| || || || Sbjct 33731 TTGGTAAGGTTTATCGTGTTGCATCGAATTAAGCCACATGTTCCACCACTTGTATAAGCT 33672 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTACGC 7854 |||||| || |||||| ||||| |||||| || ||||||||||||||||||| Sbjct 33671 CCCGTCAATTCCTTTGAATTTTATTCTTGCGAATATACTACTCAGGTGGAATATTTA--- 33615 Query 7855 GTTAGCTTAATTAATATA 7872 ||| ||| ||| |||| Sbjct 33614 -TTACGTTAGTTATTATA 33598 >seq4 Length=941946 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| | | || || || ||||| |||| ||| | |||||||| |||||||||| Sbjct 205595 CACTTCAGTTTTTGGCACCCTATACAGGATGTGCTATGGCTGAATATTTCAGAGATAATG 205536 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 | || ||||| ||||| || | |||||| ||||||||||| Sbjct 205535 GAAAGCATGCATTAATAATTTTTGATGATCTAAGTAAACAA 205495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192519847475642