Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13 161 8e-35 seq4 82.4 7e-11 >seq13 Length=2538962 Score = 161 bits (178), Expect = 8e-35 Identities = 566/874 (65%), Gaps = 21/874 (2%) Strand=Plus/Minus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATAT 4314 |||| || || || | ||||||||||| || ||||| ||||| |||| || || || Sbjct 2310571 ATTTCTGATAATCTGCAACTCGCTTTTCAAAAAAATTTGTTTTTCCTTGTAGGGATATGA 2310512 Query 4315 TTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 ||||| | | || ||||| ||| | | || ||| | || | | | | | Sbjct 2310511 GATCCATCCAGTTGAATGGATTCTTTGAATGGAAAATTTTGGAAGACCCCAAACATTCCA 2310452 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | ||||| ||||| |||||||| |||||||| ||| | | | || || ||||||| Sbjct 2310451 GTAATCGATCAGCGACAAATTCGATATACTGAGACATTAATCTAGAATTCATCCCAATTA 2310392 Query 4435 ATCTCACA-GGTAGCG---CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 | ||||| || | | || || | || | |||| |||| ||| || ||| | Sbjct 2310391 AA-TCACAAGGCAAAGATTCGCATATAAATGA-TCTT--TCTACTTCTACTGCCTCTTTA 2310336 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 | |||| | | |||| | | ||||||| |||| | | | | | |||||| Sbjct 2310335 ACGATATTCTGCACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATAAATTAAACAG 2310276 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||| || | ||||| |||| ||||||| ||| ||| || || ||||| Sbjct 2310275 TTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAATGTCAATCC- 2310217 Query 4611 GGCATTAAACCTCT----CTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||| | | |||||||| ||||||||| || || ||| ||| || Sbjct 2310216 ---ATGTAACTTATTTTGCTTTTTAAACCAAAATATTGCACAGAAACTTCCACTAAATAA 2310160 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||||||| ||| || |||| | | || || | | | || || Sbjct 2310159 AATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAG---TATCATT 2310103 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||||| |||||| ||||| || || || || || | | |||||| | Sbjct 2310102 TATCCATTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTCTATAGCATG 2310043 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 |||||| || | |||| | || | || ||| | || |||| || || || | Sbjct 2310042 AAATAAATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAAACTGTATGT 2309983 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 ||| |||||||||||||| | ||| || ||||| ||||| | | || ||||| | Sbjct 2309982 TTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCCTCTGTAAT 2309923 Query 4907 TTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||||||| || |||| ||| ||| |||| ||||| || || || ||||| |||| Sbjct 2309922 TTGAACTT-GTCGTAAAAACTTACTAGCTAAATTTTCCAAAACAATTCCATCACTTGCTG 2309864 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 ||||||| || |||||||| |||||| | || ||| | | || | ||||| | | Sbjct 2309863 CAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATTTTTCGAAAT 2309804 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 ||||| | | |||||| | ||| || | |||||||| || ||||| ||||||| Sbjct 2309803 CTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTTCTGCTTTTT 2309744 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGG 5119 | || | | ||| | ||| |||||| ||| || Sbjct 2309743 TATAAAAATCCCACACATCTGGATACAAAATGGG 2309710 >seq4 Length=941946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 114457 AAATCAAAAGTGTTTATGGGTCCAATATATTATCTTAGACTCAGACACTTAACAAAAGAC 114516 ||||||||| | ||||| || |||| |||||||| ||| | | ||| | ||||| Sbjct 270853 AAATCAAAAATATTTATAGGGCCAACATATTATCAAAGATTAAAACATATGGTGGAAGAC 270794 Query 114517 AAGGCTACC-GTAAGATGCAGAGGTaaaaaaaCAAAGTTAATAAGACAAGCCAAC-GAAG 114574 || ||| | |||| | |||||| | ||| | | | | ||||| ||||| |||| Sbjct 270793 AAAA-TACATGCAAGAAGTAGAGGTCCATTAACTATGATTACGCGACAA-CCAACAGAAG 270736 Query 114575 GCAGAAAAAGAGGTGGAGGAATTAAGTTTGGAGAAATGGAGCGAGATTGTATAATAGCAC 114634 | ||| ||| | ||| || ||| |||||||||||||| |||||||||| || | | Sbjct 270735 GAAGATCAAGGGATGGGGGTCTTAGATTTGGAGAAATGGAAAGAGATTGTATGATTTCTC 270676 Query 114635 ACGGTGCCGCAAA 114647 ||||| | ||||| Sbjct 270675 ACGGTTCTGCAAA 270663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045732932419