Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13 405 7e-108 >seq13 Length=2538962 Score = 405 bits (448), Expect = 7e-108 Identities = 1016/1518 (67%), Gaps = 47/1518 (3%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||| |||||||||| |||||||||| || || | | ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || ||||||||||| | |||||||| ||||||| |||||| | |||||| ||||||||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| | ||| ||| || | |||||| | | |||||| ||||| | Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACA---ACATCCCAAAGATCGTATTGTAGAATTCCG 77342 | ||||| |||| | | || |||| ||| | || |||||| |||||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACATTCCACATGTCAAATTGTAAAATTCCT 815437 Query 77343 TTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAA 77402 | |||||| || | |||||||||||||||||| | || ||| | ||| | Sbjct 815436 TGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTTGAGCCAATTCCATA 815377 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 | |||||| || | ||||| || ||||| ||||| | ||||| | |||| || Sbjct 815376 GACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTAGCA 815317 Query 77463 TCAATACTAT-CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCC 77521 ||| || || | ||||| ||| | ||||| | ||| || ||||| ||||| || Sbjct 815316 G-AATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGAACCCC 815258 Query 77522 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 || || || ||||||||||| ||||||| || |||||||| || || |||||||| Sbjct 815257 TATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAATAATT 815198 Query 77582 AATGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTAACCACGTCCTTTAGTTT 77638 | ||||||||||||| | ||||| ||| || | | || | | | ||||| Sbjct 815197 TCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTA---ATTTGGTAAAGTTT 815141 Query 77639 AAGAAAATCAAA-TCTTCCATCTAT-----AACAAACATGTTCAAAGCTATAGATGCTAG 77692 ||||| ||| |||| ||| | ||||| || || ||||||||||| || Sbjct 815140 CTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAATGCTATAGATGCCAG 815081 Query 77693 ATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACT 77752 |||||| || || || |||| || | |||| || ||||| ||||| ||||| Sbjct 815080 ATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGTTACT 815021 Query 77753 ACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAG 77812 |||||| ||||| || | ||||| || || || ||| || || || |||||||| Sbjct 815020 ACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTATAAAG 814961 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC 77872 || | || || ||||| ||| || || ||||| | || || | | | | Sbjct 814960 CATGTAAGGGACACCTGTTTCTATC--TGGCTCTGTAATA---TAGCAAACCA-TAAATC 814907 Query 77873 TTTTATCATAGA---TTTGTATCGCC----TCTCTCTTTCATATTGAGTATATAGCCGTT 77925 || | | ||| ||| | || || | ||| ||||||| ||||||| | || Sbjct 814906 TTGT-GCTAAGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAACTTTT 814848 Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985 ||||||| || ||||| || || || || || |||||||| ||||| || | || Sbjct 814847 CAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAAGTCC 814788 Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 | | || ||| ||||||| ||||||||| ||||| || | ||| | |||| || | Sbjct 814787 AATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGCATAGAAAA 814728 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 ||||||| | ||| |||||| ||||| ||| ||| | | ||| | ||| || | || Sbjct 814727 GATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCAAAAA 814668 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 | ||||||||||||||||| | |||| || | | ||| || ||| ||||| | Sbjct 814667 TGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCTCCTT 814608 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTAGAT 78224 |||||| |||||| || || | ||| | ||||| | ||| || | |||| ||||| ||| Sbjct 814607 GATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTTGGAT 814549 Query 78225 GTTCCATTTGTTCCAGAAATAT---AACTTCCACTTGCGCGAATATTACTAATGGATATC 78281 ||||||| ||||| ||||| || || || | | || || | | || | | Sbjct 814548 ATTCCATTCGTTCCTCTAATATATGAATTTTGACCT-CTTATATCTTGC-ACTGCA-ACT 814492 Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || || || || || | || |||| || || |||||||||| ||| | || || Sbjct 814491 CCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAATTCCT 814432 Query 78342 TCTAT--ACTGTCA-TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 ||||| | | | | | ||| || ||| || |||||| ||||||||| | | Sbjct 814431 TCTATCGAATCTGATTTCAT--TGATAATAA-AAAACACGAAGACATTTGTGGTCTTGGA 814375 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | ||| |||||||| |||| |||||| || || |||| | || | || | Sbjct 814374 GTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGTGA 814315 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||||| ||| ||| | || || | ||| ||||| | | ||| | ||| || Sbjct 814314 TATGTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATTAA 814256 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 || ||| || |||||||||| | || ||| || | || ||||| ||| || Sbjct 814255 CAAATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCTAA 814196 Query 78578 AGTTTTAAAACCAAAATA 78595 || ||||||||||| || Sbjct 814195 TGTCTTAAAACCAAAGTA 814178 Score = 210 bits (232), Expect = 3e-49 Identities = 392/568 (69%), Gaps = 16/568 (3%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || || |||||||||| |||||| ||||| ||| ||| Sbjct 2310284 ATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAAT 2310225 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | || | | ||| | | ||||| | |||||||||||| |||| |||| Sbjct 2310224 GTCAATCCATGTAACTTATTTTGC--TTTTTAAACCAAAATATTGCACAGAAACTTCCAC 2310167 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---GTAACTGGCTT 48309 ||| || || ||||||||| ||| ||| | || ||| | | || | | | Sbjct 2310166 TAAATAAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTAT 2310107 Query 48310 CGTTGTGTATCCACCGTTG--TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 | || |||||| ||| |||||| || || || |||||| || || |||| Sbjct 2310106 CATT---TATCCAT--TTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTC 2310052 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 |||||||| ||| | | | |||| || ||| || | |||| |||| ||||| | Sbjct 2310051 TATAGCATGAAATAAATTCAATCTTTCTTTTTCATCCTTTATGTAATTATCAATTAATAA 2309992 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 ||| || ||||||| || |||||||||| || || ||||| ||||| | | || Sbjct 2309991 ACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGC 2309932 Query 48488 TTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 ||||| || || || | |||| ||| | | ||| ||||| || || ||||||| Sbjct 2309931 CTCTGTAATTTGAACTTGTCGTAAAAACTTACT-AGCTAAATTTTCCAAAACAATTCCAT 2309873 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 |||| || |||||||||||||| |||||||| ||||||| ||||| || | | | || Sbjct 2309872 CACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTAATT 2309813 Query 48607 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCT 48666 | | | || || | ||| | |||| ||||| ||| || ||||||||||||||||| | Sbjct 2309812 TTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATGCTT 2309753 Query 48667 CTGCTTTTTTATACATATTCCATATATC 48694 ||||||||||||| | || ||| | ||| Sbjct 2309752 CTGCTTTTTTATAAAAATCCCACACATC 2309725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662348263520