Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13 379 3e-100 >seq13 Length=2538962 Score = 379 bits (420), Expect = 3e-100 Identities = 1008/1520 (66%), Gaps = 51/1520 (3%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || ||||| |||||||| | |||||||||| || || | || ||| || ||| Sbjct 815676 AGCAGATGTGGATTAACTACGAAAAATTCTCCACTCAGAACACGTCTGTAGTAGATGTTA 815617 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || ||||||||||| | |||||||| ||||||| |||||| | ||| || ||||| ||| Sbjct 815616 CTAGTATATGGTTCAAAGGATTCATTATTTCCCAGAATTTGCGAAGTAGATGCAGTTGGC 815557 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || || |||| | ||| ||| || | |||||| | | |||||| ||||| | Sbjct 815556 ATTGGAGCCAGAAGTAATGAATTCCTCAATCCATGTTTCTTTATTTTAGTCTTTAGTTCA 815497 Query 75881 TTCCAATCCCAA-AGATCTGATGGTACA--ACATCCCAGAGATCGTATTGTAGAATTCCG 75937 | ||||| |||| | | | || | |||| ||| | || |||||| |||||| Sbjct 815496 TCCCAATTCCAATATTTATTATCAACCTTTACATTCCACATGTCAAATTGTAAAATTCCT 815437 Query 75938 TTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAA 75997 | ||||| || | ||||||||| |||| || | | || ||| | ||| | Sbjct 815436 TGACTAGCTGGACTACCCTGATATGTTTCATAAGGTCCATACACTTGAGCCAATTCCATA 815377 Query 75998 CTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCT 76057 | || || ||| | ||||| || ||||| ||||| | ||||| | |||| || Sbjct 815376 GACATTTCCAAAGCAGCATAATACATAGTTTCAAAAATTCTTTTATTTAATTCTTTAGC- 815318 Query 76058 TCAAGACTAT----CAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAAC 76113 ||| | | || | ||||| ||| | ||||| | ||| || | ||| ||||| Sbjct 815317 ---AGAATCTGATTCATAGGGATATCTTAATAACATAAAAGTATCAGCCAATCCTTGAAC 815261 Query 76114 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATA 76173 || || || || ||||||||||| ||||||| || ||||||| || |||||||| Sbjct 815260 CCCTATTCCTATTGGTCTATGTCTTGTATTGGATCTTCTAGCTTCTTCAACTGGGTAATA 815201 Query 76174 ATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT 76233 ||| | ||||||||||||| | ||||| || | ||| | | | ||||| Sbjct 815200 ATTTCTTTCTATAATTTTATCCAAATTTCGTGTAATAATTTTTGTAATTTGGTAAAGTTT 815141 Query 76234 GAGAAAATCAAATT-----TTCCATCTATC-ACAAA----CATATTAAGAGCTATAGATG 76283 ||||| ||||| ||| | |||| ||||| |||| | |||||||||| Sbjct 815140 CTTAAAATTAAATTCTTTTTTCTCTGTATCTACAAATTTGCATAAT----GCTATAGATG 815085 Query 76284 CTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGAT 76343 | |||||||| || || || |||| || | | |||| || ||||| |||| | Sbjct 815084 CCAGATTACATACAGCAACTTCATCAGGAGATGTGTATTCAATAATCTCACAACATAAGT 815025 Query 76344 TACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTAT 76403 ||||||| || |||||||| | ||||| || || || ||||| || || |||| Sbjct 815024 TACTACATTTTATAGTTCCTAAATTTTTCTGATTCGATTTAGAATTACACGAATCTTTAT 814965 Query 76404 AAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 76463 |||| | | || || ||||| ||||| || ||||| | || || | | Sbjct 814964 AAAGCATGTAAGGGACACCTGTTTCTATCTGGC--TCTGTAATATAG---CAAACCA-TA 814911 Query 76464 TAGCTTTTATTATAGA---TTTGTATCGC----TTCTCTCTTTCATATTGTGTATATAAC 76516 | ||| | || ||| ||| | || | || ||| ||||||| |||||||||| Sbjct 814910 AATCTTGTGCTA-AGACTGTTTTTTTCCCCATGTTTTCTTCCTCATATTTTGTATATAAC 814852 Query 76517 CGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAAT 76576 ||||||||| || ||||| || || || ||||| ||||| |||||||| || Sbjct 814851 TTTTCAAATTCTTCACCCCATGTTTCGCTTAACCCTGGACACTCATTTGGACACATTAAA 814792 Query 76577 GACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 76636 | ||| | || ||| ||||| | ||||||||| ||||| || | ||| | |||| Sbjct 814791 GTCCAATTTTTATTTTCTTTAACTCTTTTCATAAAAAGATCTGGAACCCACACAGCATAG 814732 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 || |||||||| | ||| |||||| ||||| ||| ||| | | ||||| || || Sbjct 814731 AAAAGATCTCGAGCTCTTAATTCTTCTTTTCCATGATTTTTTCTTAAATCTAAAAATTCA 814672 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | ||| ||||||||||||||||| | |||| || | | || || ||| ||| Sbjct 814671 AAAATGTCAGAATGCCATGGTTCAATGTATACAGCAAAAGATCCTTTTCTTTTCCCTCCT 814612 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTT 76815 || ||||||| |||||| ||||| | ||| | ||||| | ||| || | |||| ||||| Sbjct 814611 CCTTGATCTACATATCTAGCAGTATCATTGAATACTCTTAGCATAGGTACTAAT-CCGTT 814553 Query 76816 AGATGTACCATTTGTTCCAGAAATAT---AACTTCCACATGCACGAATATTACTAATAGA 76872 ||| | ||||| ||||| ||||| || || || | | |||| | | Sbjct 814552 GGATATTCCATTCGTTCCTCTAATATATGAATTTTGAC---CTCTTATATCTTGCACTGC 814496 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || || |||| |||| ||||| |||||||||| || | || Sbjct 814495 AACTCCAATACCACCAGCTGTTTTGCTAATTAATGCACATTGTTTCAATGTTTCGAAAAT 814436 Query 76933 GCCCTCTATACTATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 || ||||| ||| ||| || ||| || |||||| ||||||||| | Sbjct 814435 TCCTTCTATCGAATCTGATTTCATTGATAATAA-AAAACACGAAGACATTTGTGGTCTTG 814377 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 |||||| | ||| || |||||||||| |||||| ||||| |||| | || | || | Sbjct 814376 GAGTTCCAGAATTGAATAATGTAGGAGTTGCATGTGTGAAATATTTCTGTGACATTAAGT 814317 Query 77052 TGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATC 77110 |||||||||| || ||| | ||| || | ||| ||||| | || || | ||| Sbjct 814316 GATATGTTTCAAGTGCTTTTTCCAAATCGTCAAT-ATGGATTCCAATAGATACTCTCATT 814258 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 |||| ||| || |||| ||| | | | || ||| || | || ||||| ||| Sbjct 814257 AACAAATGTTGTGGTCTTTCAATAATTTTCCCATTAATGCGTAGTAAATATGACCGTTCT 814198 Query 77171 AAAGTTTTAAAACCAAAATA 77190 || || ||||||||||| || Sbjct 814197 AATGTCTTAAAACCAAAGTA 814178 Score = 196 bits (216), Expect = 7e-45 Identities = 395/577 (68%), Gaps = 22/577 (4%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || || |||||||||| |||||| ||||| ||| ||| Sbjct 2310284 ATTAAACAGTTAAAATCTGTGTGTAGTCCTTCATCTCGACTAATCAATTCATTACTGAAT 2310225 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | ||||||| | ||||||||| || |||| |||| Sbjct 2310224 GTCAATCCATGTAACTTATTTT--GCTTTTTAAACCAAAATATTGCACAGAAACTTCCAC 2310167 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCAT 46798 ||| || || |||||||| || ||| || | || ||| | | || | | || Sbjct 2310166 TAAATAAAATTCCTTCTACGCATGCATTTGCCACTATCCTTTCTGCAAAGGAATTAGTAT 2310107 Query 46799 CATTATGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 |||| ||||| |||| ||||| || || || |||||| || || |||| Sbjct 2310106 CATTT---ATCCA--TTTGGCTGCCCATAATGCTTTATTTTTTACAGCTGGTATATTTTC 2310052 Query 46857 TATAGCATTAAAGAGA---AAGtttttttCATCACTATCTTTAACATATGTATCTATTAA 46913 |||||||| ||| | | || ||| || ||| || || | || |||| ||||| Sbjct 2310051 TATAGCATGAAATAAATTCAATCTTTCTTTTTCA---TCCTTTATGTAATTATCAATTAA 2309995 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | ||| || |||| ||||| || ||||||| ||| || ||||| ||||| | | Sbjct 2309994 TAAACTGTATGTTTCGGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTT 2309935 Query 46974 TGCTTCAGTAATCTGTACCTCT-GTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 ||| || ||||| || || | | ||| ||| | | || ||||| || || |||| Sbjct 2309934 TGCCTCTGTAATTTGAACTTGTCGTAAAAACTTACT-AGCTAAATTTTCCAAAACAATTC 2309876 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 ||||||| || ||||||||||| || |||||||| ||||||| ||||||| | | | Sbjct 2309875 CATCACTTGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGCTTTTCATTATCATTTA 2309816 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 ||| | | || || | ||| | |||| ||||| ||| || |||||||| ||||| | Sbjct 2309815 ATTTTTCGAAATCTTTTAAATCACTCGATAAATCTATTTCCTCCGCTGTCCAAAATGATG 2309756 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 | |||||||||||||| | || ||| | ||| |||| Sbjct 2309755 CTTCTGCTTTTTTATAAAAATCCCACACATCTGGATA 2309719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927778621760