Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 132 1e-25 seq13 86.0 1e-11 >seq11 Length=2227116 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| |||||| ||| || || || ||||| |||||||| | || | |||||| || Sbjct 206674 TACCAAATGTAAAGTGGACTCCTTCTGAATGTTATAGTCAGCTAATGTTCTGCCATCTTC 206615 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||||||| || ||||| || || | ||||| || ||||| || ||||| ||||| Sbjct 206614 TAGTTGTTTTCCTGCAAATATTAATCTCTGTTGATCGGGTGGAATTCCTTCCTTATCTTG 206555 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || ||||| || || | || || || || || | ||||| || || ||||| || || Sbjct 206554 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGACTCGACATCAAGGGTGATGGTTTT 206495 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || || |||||||| |||||||| Sbjct 206494 TCCGGTTAATGTTTTTACGAATATTTGCATTTT 206462 >seq13 Length=2538962 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 273508 TCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATCA 273567 |||| ||||||||| | |||||||| || |||||| || | ||||| || || Sbjct 1011325 TCTT-CCTTTGAAATCCTTGTACCAAGGGATCATGGGTAGTAGTGGTTCTTTGTTAATAT 1011267 Query 273568 GTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAAC 273627 |||| | ||| |||||||||||||| ||| ||| | || | | | ||| ||| Sbjct 1011266 AACGCTTAATATTTTCAATAATATCTTTATAGTTATAATTGGGTATGGAGGAAGAGTAAC 1011207 Query 273628 CGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATT 273687 | || |||||||| | | || || || ||||| | || |||| ||| | ||||||| Sbjct 1011206 CCGTTCCAATACCTTCACAGCCGTTGACTAGAATTGTTGGAATAACTGGAATGTAATATT 1011147 Query 273688 CGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || ||||| | ||| || |||| || || |||| | | |||||| Sbjct 1011146 GTGGTTCTATTTTTTGACCTTCCTCGTTTAGATATCTCAATATTGGATCATC 1011095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046729235369922