Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 >seq23 Length=1360573 Score = 123 bits (136), Expect = 2e-23 Identities = 272/404 (67%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 |||| ||| |||| ||| | | | || || |||| | ||||| || ||| || || Sbjct 1026352 TAGACGTGGGCATTTCCCAAAATGTGTATGAACTGTGCAGGCTGTAAATTGCACACCTGT 1026293 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 ||||||||| || || | ||||| || ||||| || || || || | |||| Sbjct 1026292 GCAATCATGTGTGTGAATATGGAATAAGATGCTATGTTGAAGGGGACCCCAAGACCCAAG 1026233 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881 ||| || |||||||||| || || || || ||||| | || |||||||||| | Sbjct 1026232 TCACAAGACCTTTGATACATAATGCATGACAGTTTCCCATCGAAAACGTAAAATTGACAT 1026173 Query 101882 AATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 || | ||||||||| || || |||||| | | ||| ||||||||| ||||| | Sbjct 1026172 AAGATATGACAAGGAGGTAAAGCCATTTGATCCAAATCTTTAACATTCCATGCACATAGG 1026113 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001 | || || ||| || || | ||||||| || || | | |||||||||||| Sbjct 1026112 ATAATTCTCCTACTCGTTGGTTCATTTTTTATTAAATGGATAACATTTTTTAATTGGTCT 1026053 Query 102002 ACTCCTTCTCCTTTATAATCGCGCCCAACACCTT--TATATTCTGCTCCGAAATGCCTCC 102059 || |||| ||| |||| | | ||| || | ||||| || || || || |||| Sbjct 1026052 ACACCTTTATCTTCGTAAT--TGTCATACATGTTTGTGTATTCAGCACCAAAGTGTCTCC 1025995 Query 102060 ACTGAAATCCATACACAGGTCCAAGATCTCCTTCA--TCTCTGT 102101 |||| || ||||| | |||||| || || |||| ||||||| Sbjct 1025994 ACTGGAAACCATAAATAGGTCCCAG--GTCATTCACTTCTCTGT 1025953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361251076723028