Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq27 242 4e-59 seq24 161 1e-34 >seq27 Length=1720986 Score = 242 bits (268), Expect = 4e-59 Identities = 819/1251 (65%), Gaps = 32/1251 (3%) Strand=Plus/Minus Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA--T 53498 ||| | ||||| || |||||||| || | ||||||| |||| ||| | || | Sbjct 632151 GCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAG--AATCTGATT 632094 Query 53499 CAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557 || |||| || | |||| || || || | |||||| ||||| || || || ||||| ||| Sbjct 632093 CATATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATA 632035 Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 ||||| |||||||| || || |||||||| ||| ||| || ||||| | || || Sbjct 632034 GGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATT 631975 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677 |||| | | ||| | ||| | ||| | || | ||| || ||||| ||| Sbjct 631974 ATTTGGTCCAAGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAAT 631915 Query 53678 TGTCC---ATCTATT---ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 | | ||||| ||||| || ||| || ||||| |||| ||||| ||||| Sbjct 631914 TCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGCC 631855 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || || | | | ||||| || |||||| || || |||||||| || || || Sbjct 631854 ACTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGTA 631795 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 |||||||||| |||||| ||| |||||| | ||||||||| || ||| | || Sbjct 631794 CCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAACC 631735 Query 53852 CCAGTTTCAATCTGGGATTCT--ATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG 53909 || ||||| ||||| | ||| | ||| || ||| | | | || || | | Sbjct 631734 CCTGTTTCTATCTG--ACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTT- 631678 Query 53910 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA-ATCGTT-CAAACTCGTCTCCCCA 53967 ||| || | | ||| | | ||| | || | | | | || | || || | ||||| Sbjct 631677 -TTTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCA 631619 Query 53968 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027 | || || |||||||||| ||| |||||||| | ||| | | || ||||| Sbjct 631618 TGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCTT 631559 Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 54086 |||| |||||||| || ||||| | ||| | ||| ||| || |||||||| | ||| Sbjct 631558 TACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTTA 631500 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 |||| || || || ||| || |||||| | ||| | | |||||| |||||||||| Sbjct 631499 GTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACG 631440 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 |||| | || | | | | ||| || || || || || |||| ||||||| Sbjct 631439 GTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAG 631380 Query 54207 CGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTCCCG 54265 | || | |||| | ||||||| |||||| | |||| || |||||| ||||| || || Sbjct 631379 CTGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCCT 631321 Query 54266 GAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCAT 54324 || | || | | | | ||||| | || || || || || || || | Sbjct 631320 CTAATGTAAGAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTGT 631262 Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 ||| || | ||||| |||||| || || | ||||| || || ||| | Sbjct 631261 TTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTT 631202 Query 54385 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 |||| ||| |||||||| |||||||||| | | || || | ||| || ||||| Sbjct 631201 CATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGT 631142 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 ||| | ||||||||||| | || | ||| | |||| ||||||||| | ||| || Sbjct 631141 AGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTC 631082 Query 54505 TATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 54563 | ||| ||| | ||| || || | | || | ||| | | || || ||||| |||| Sbjct 631081 CAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAA 631023 Query 54564 CGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 ||||| |||||| || | ||||||| ||||||| ||||| || ||||| || | Sbjct 631022 TAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAAT 630963 Query 54624 TGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 || ||||| |||||| |||| ||| | ||| ||| ||||||| Sbjct 630962 CATAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 161 bits (178), Expect = 1e-34 Identities = 371/551 (67%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||||| ||||| || | |||||||| |||||| || |||||||| | Sbjct 1241353 AAATCTGTGTGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGT 1241294 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCC 24259 | | ||||||||| |||||| |||| | || || |||| ||| ||||| || Sbjct 1241293 AACTTGTTCTGCTTTTTAAACCAAAAAATGG-CACAGAAACTTCCACTAAATAAAATACC 1241235 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTT 24319 ||||| |||| || | | ||||| || | | |||| | ||||||||| Sbjct 1241234 CTCTACACACGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTT 1241175 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||||| || || || || ||| || || |||| ||||| | ||| |||| Sbjct 1241174 GGCAGCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATT 1241115 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 || | || || ||| || | || | || || || | ||||| | |||||||| Sbjct 1241114 CATTCTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATG 1241055 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTT 24498 ||| ||||||| ||| || || || || ||| ||| ||||| || || || |||| Sbjct 1241054 AATATTTTCAACGGCAATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTT 1240996 Query 24499 CTA-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || ||| | | || ||||||||||| ||||||||| ||||||||||||||||| Sbjct 1240995 GGCGTAAAAATTTGCTC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAG 1240937 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 ||||| ||||||||||| || | |||||| | | ||| ||| | |||| || | | Sbjct 1240936 GCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAA 1240877 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || | || | || | ||| || ||||||| || || || || || || || || | | Sbjct 1240876 TCGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAA 1240817 Query 24678 TTCCAGATGTC 24688 | ||| | ||| Sbjct 1240816 TCCCAAACGTC 1240806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721392197440