Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq27 84.2 2e-11 >seq27 Length=1720986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||| |||||||| || || || || |||||| | || Sbjct 553427 GATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553486 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| || |||| ||||| || || |||||||| || | ||| | || ||| Sbjct 553487 GACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACACTTAGTCTTA 553546 Query 29175 CGATTACGAGGAGG 29188 || |||||||| || Sbjct 553547 CGTTTACGAGGTGG 553560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||| |||||||| || || || || |||||| | || Sbjct 553655 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553714 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || |||||||||| || || || ||||| || | || | || ||| Sbjct 553715 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 553774 Query 29175 CGATTACGAGGAGG 29188 || |||||||| || Sbjct 553775 CGTTTACGAGGTGG 553788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||| |||||||| || || || || |||||| | || Sbjct 553883 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553942 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || |||||||||| || || || ||||| || | || | || ||| Sbjct 553943 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554002 Query 29175 CGATTACGAGGAGG 29188 || |||||||| || Sbjct 554003 CGTTTACGAGGTGG 554016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||| |||||||| || || || || |||||| | || Sbjct 554339 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 554398 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || |||||||||| || || || ||||| || | || | || ||| Sbjct 554399 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554458 Query 29175 CGATTACGAGGAGG 29188 || |||||||| || Sbjct 554459 CGTTTACGAGGTGG 554472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||| |||||||| || || || || |||||| | || Sbjct 554567 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 554626 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || |||||||||| || || || ||||| || | || | || ||| Sbjct 554627 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554686 Query 29175 CGATTACGAGGAGG 29188 || |||||||| || Sbjct 554687 CGTTTACGAGGTGG 554700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335853830340