Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 3e-14 >seq27 Length=1720986 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 553427 GATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553486 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| || |||| ||||| || ||||||||||| || | ||| | || ||| Sbjct 553487 GACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACACTTAGTCTTA 553546 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 553547 CGTTTACGAGGTGG 553560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 553655 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553714 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || |||||||||| || ||||| ||||| || | || | || ||| Sbjct 553715 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 553774 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 553775 CGTTTACGAGGTGG 553788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 553883 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 553942 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || |||||||||| || ||||| ||||| || | || | || ||| Sbjct 553943 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554002 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 554003 CGTTTACGAGGTGG 554016 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 554339 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 554398 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || |||||||||| || ||||| ||||| || | || | || ||| Sbjct 554399 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554458 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 554459 CGTTTACGAGGTGG 554472 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 554567 GATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 554626 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || |||||||||| || ||||| ||||| || | || | || ||| Sbjct 554627 GATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554686 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 554687 CGTTTACGAGGTGG 554700 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 554795 GACAAGGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAG 554854 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| || |||||||||| || ||||||||||| || | ||| |||| ||| Sbjct 554855 GACGGAAGAACCTTGTCCGATTACAACATCCAAAAGGAATCCACCTTACACTTGGTCTTA 554914 Query 25248 CGATTACGAGGAGG 25261 || |||||||| || Sbjct 554915 CGTTTACGAGGTGG 554928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796659815592