Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq27 178 2e-39 seq19 98.7 2e-15 seq23 86.0 9e-12 >seq27 Length=1720986 Score = 178 bits (196), Expect = 2e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| ||||| || || || || || | || | || || Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || |||||||||||||||||| | |||| || ||||| || Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || ||||| || |||||||||||||||||||| ||| || Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 553799 Score = 178 bits (196), Expect = 2e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||| || || || || || | || | || || Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || |||||||||||||||||| | |||| || ||||| || Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || ||||| || |||||||||||||||||||| ||| || Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 554027 Score = 178 bits (196), Expect = 2e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||| || || || || || | || | || || Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || |||||||||||||||||| | |||| || ||||| || Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || ||||| || |||||||||||||||||||| ||| || Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 554483 Score = 178 bits (196), Expect = 2e-39 Identities = 182/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||| || || || || || | || | || || Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || |||||||||||||||||| | |||| || ||||| || Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || ||||| || |||||||||||||||||||| ||| || Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 554711 Score = 163 bits (180), Expect = 4e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||| || || || || || | || | || || Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| || || || |||||||| || |||||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || |||||||||||||||||| | |||| || ||||| || Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || || ||||| || |||||||||||||||||||| ||| || Sbjct 554198 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 554255 Score = 152 bits (168), Expect = 8e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || ||||| || || || || || | || | || || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| || || || |||||||| || |||||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || ||||||||||||||||| | |||| || ||||| || Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||||| ||||| || || || ||||| |||||||||||||||||| || || Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGGTTTTTAA 554935 Score = 138 bits (152), Expect = 2e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| ||||| ||||| ||||||||||||||||| || || ||||| ||||| || ||| Sbjct 553406 AATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATT 553465 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 || || ||||||||||||||||| | |||| || || || || || ||||| ||| Sbjct 553466 TTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAA 553525 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || || || || |||||||||||||||||||| ||| || Sbjct 553526 TCCACCTTACACTTAGTCTTACGTTTACGAGGTGGTATGCAAATTT 553571 >seq19 Length=2400328 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||| |||| |||| ||| |||| || ||||| || || | || | || ||| Sbjct 232723 AATGCAAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 232782 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| ||||| || |||||| | ||||| ||||| || |||||||||| Sbjct 232783 CGAAACGATTAGGAATGTTAAATCA-AAAATTGAGGATAAGGAAGGAATCCCACCTGATC 232841 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 |||| ||||| || | | ||||||| || || |||||| Sbjct 232842 AACAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGAT 232879 >seq23 Length=1360573 Score = 86.0 bits (94), Expect = 9e-12 Identities = 213/320 (67%), Gaps = 5/320 (2%) Strand=Plus/Minus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| | || |||| |||| || | || || || || || | |||| Sbjct 1026295 TGTGCAATCATGTGTGTGAATATGGAATAAGATGCTATGTTGAAGGGGACCCCAAGACCC 1026236 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 | ||| || ||||||||||| |||| || ||| || | || | |||| Sbjct 1026235 AAGTCACAAGACCTTTGATACATAATGCATGACAG---TTTCCCATCGAAAACGTAAAAT 1026179 Query 205570 TGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 || ||| || | ||||||||| |||| | |||| | || | |||| || |||||| || Sbjct 1026178 TG-ACATAAGATATGACAAGGAGGTAAAGCCATTTGATCCAAATCTTTAACATTCCATGC 1026120 Query 205629 TGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAA 205688 || || || | ||| |||| |||||||||| || |||| || | |||| Sbjct 1026119 ACATAGGATAATTCTCCTACTCGTTGGTTCATTTTTTATTAAATGGATAACATTTTTTAA 1026060 Query 205689 TTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATG 205748 ||| || | |||| || | ||||| || ||| | | |||| ||||||||| || Sbjct 1026059 TTGGTCTACACCTTTATCTTCGTAATTGTCATACATGTTTGTGTATTCAGCACCAAAGTG 1026000 Query 205749 ACGCCATTGAAAACCATAAA 205768 | ||| || |||||||||| Sbjct 1025999 TCTCCACTGGAAACCATAAA 1025980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455735590400