Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 >seq27 Length=1720986 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | || || || || | || || |||||||| |||||||||||| Sbjct 554246 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554187 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | |||||||| ||| | ||||| | |||||||| || | Sbjct 554186 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554127 Query 118630 GTATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 | || || |||||||| |||| |||| ||| || | ||| | ||||| | ||| Sbjct 554126 GAATACCTTCCTTGTCCTGTA-TTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554068 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | || || || || || |||||||||||||| ||||| Sbjct 554067 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || ||||| | || |||||||| | || || || ||||| |||||||||||| Sbjct 554929 ACCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGA 554870 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || | ||||| | |||||||| ||| | ||||| | |||||||| || || Sbjct 554869 CAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554810 Query 118631 TATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || || |||||||| |||| |||| ||| || | ||| | ||||| | ||| | Sbjct 554809 AATACCTTCCTTGTCCTGTA-TTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554751 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || |||||||||||||| ||||| Sbjct 554750 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | || || || || | || || |||||||| |||||||||||| Sbjct 554018 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553959 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | |||||||| ||| | ||||| | |||||||| || | Sbjct 553958 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553899 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| ||||| ||| || | ||| | ||||| | ||| | Sbjct 553898 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553839 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || |||||||||||||| ||||| Sbjct 553838 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | || || || || | || || |||||||| |||||||||||| Sbjct 554474 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554415 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | |||||||| ||| | ||||| | |||||||| || | Sbjct 554414 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554355 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| ||||| ||| || | ||| | ||||| | ||| | Sbjct 554354 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554295 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || |||||||||||||| ||||| Sbjct 554294 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | || || || || | || || |||||||| |||||||||||| Sbjct 554702 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554643 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | |||||||| ||| | ||||| | |||||||| || | Sbjct 554642 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554583 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| ||||| ||| || | ||| | ||||| | ||| | Sbjct 554582 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554523 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || |||||||||||||| ||||| Sbjct 554522 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | || || || || | || || |||||||| |||||||||||| Sbjct 553790 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553731 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | |||||| | |||||||| ||| | ||||| | |||||||| || | Sbjct 553730 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553671 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| ||||| ||| || | ||| | ||||| | ||| | Sbjct 553670 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553611 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || || || || |||||||| ||||| Sbjct 553610 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830251955376