Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq27 116 6e-21 >seq27 Length=1720986 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || |||||||| || |||||||| || || ||||| || Sbjct 553788 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 553729 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 553728 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 553669 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 553668 ATACCTTCTTTATCTTG 553652 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || |||||||| || |||||||| || || ||||| || Sbjct 554016 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 553957 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 553956 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 553897 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 553896 ATACCTTCTTTATCTTG 553880 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || |||||||| || |||||||| || || ||||| || Sbjct 554472 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554413 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 554412 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554353 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 554352 ATACCTTCTTTATCTTG 554336 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || |||||||| || |||||||| || || ||||| || Sbjct 554700 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554641 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 554640 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554581 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 554580 ATACCTTCTTTATCTTG 554564 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || |||||||| || |||||||| || || ||||| || Sbjct 554244 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554185 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 554184 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554125 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 554124 ATACCTTCCTTGTCCTG 554108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| || || ||||| || ||||| || || || || || || Sbjct 553560 CCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 553501 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 553500 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGA 553441 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 553440 ATACCTTCTTTATCTTG 553424 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| | | ||| ||||| ||||| || ||||| || || || ||||| || Sbjct 554928 CCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGAC 554869 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || |||||||||||||| || ||||| | |||||||||||| || ||| Sbjct 554868 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554809 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 554808 ATACCTTCCTTGTCCTG 554792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526139765760