Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 1e-12 >seq27 Length=1720986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| |||||| || ||| || || |||||||| ||||||| | |||| || Sbjct 554910 ACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCT 554851 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 || || || || ||||||||||| | ||||| || ||| | | |||||||| | Sbjct 554850 AATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGT 554791 Query 34301 ATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 || ||| || |||| || | |||| |||| || || || |||| |||||||| || Sbjct 554790 AT-TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 554732 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || ||||| ||||| || ||||| Sbjct 554731 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 ||||| || |||||| || |||||||| ||||||| | | || || || || Sbjct 554220 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGT 554161 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || ||||||||||| | ||||| || ||| | | |||||||| ||| ||| Sbjct 554160 TTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTAT-TTT 554102 Query 34307 TGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 || |||| || | |||| |||| || || || |||| |||||||| || || || Sbjct 554101 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 554042 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || ||||| Sbjct 554041 TAGGGTTTTTACAAAAATTTGCAT 554018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071889751680