Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24 93.3 4e-14 >seq24 Length=1435464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 192/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 16414 TATCCATTTTTTAGCCCAATTTGCTTTTTGTTTAACACAGTTCATGTTCTCTATTGCATT 16473 |||||| || |||||| ||||| | || ||| | |||||||| || || | Sbjct 1241183 TATCCACTTGGCAGCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTG 1241124 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||||| || || | || || ||| || || | ||||||| || ||||| | Sbjct 1241123 AAATAGATTCATTCTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGT 1241064 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 || ||||||||||| || | || ||||| || |||||| | || || | ||| Sbjct 1241063 CTCCGAATGAATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTAT 1241004 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| |||| | |||||| || || ||||| ||||| ||||||||||| || |||| Sbjct 1241003 TTGCACTTG-GCGTAAAAATTTGCTCGCTAAATTTTCCAACACTATTCCATCACTGGCTG 1240945 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC 16695 ||||||| || | | ||||| || || | |||||| || || Sbjct 1240944 CAAAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCATTTTC 1240902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511838120800