Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq23 161 8e-35 >seq23 Length=1360573 Score = 161 bits (178), Expect = 8e-35 Identities = 236/330 (72%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 20225 TGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACA 20284 |||| ||| | ||||| || || |||||||| ||||| |||||||| ||||| | Sbjct 1025971 TGGGACCTATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACATGTATG 1026030 Query 20285 CAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAAC-G 20343 ||||| | |||| ||||| |||||| |||||||||| ||||||| |||| | Sbjct 1026031 ACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATCCATTTAATAAAAAATG 1026090 Query 20344 AACCCAAACGAC-AGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAAT 20402 |||| ||||| || |||||||| |||| || ||||| | ||||||| || | ||| Sbjct 1026091 AACC--AACGAGTAGGAGAATTATCCTATGTGCATGGAATGTTAAAGATTTGGATCAAAT 1026148 Query 20403 GGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTG 20462 |||||| ||||| |||||||| |||| |||||||||||| || || |||| || Sbjct 1026149 GGCTTTACCTCCTTGTCATATCTTATGTCAATTTTACGTTTTCGATGGGAAACTGTCATG 1026208 Query 20463 TCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTA 20522 ||||||||| | || ||| |||| || || || || ||||| || ||| ||| Sbjct 1026209 CATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATAGCATCTTA 1026268 Query 20523 TGCGCTGCTTACGTATATGATTGCACATGT 20552 | | | | || | ||||||||||| || Sbjct 1026269 TTCCATATTCACACACATGATTGCACAGGT 1026298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183863778460