Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 8e-16 seq19 82.4 6e-11 >seq27 Length=1720986 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||| || |||||||| || Sbjct 553986 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553927 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || |||||||| ||||| ||| | ||||| ||||| |||| | || || Sbjct 553926 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTT-TAGCTTT 553868 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||| || | ||||||| | || || || | || Sbjct 553867 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553808 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||||||||| Sbjct 553807 TTTTACAAAAATTTGCAT 553790 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||| || |||||||| || Sbjct 554214 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554155 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || |||||||| ||||| ||| | |||||||| || |||| | || || Sbjct 554154 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTT-TAGCTTT 554096 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||| || | ||||||| | || || || | || Sbjct 554095 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554036 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||||||||| Sbjct 554035 TTTTACAAAAATTTGCAT 554018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||| || |||||||| || Sbjct 554442 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554383 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || |||||||| ||||| ||| | ||||| ||||| |||| | || || Sbjct 554382 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTT-TAGCTTT 554324 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||| || | ||||||| | || || || | || Sbjct 554323 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554264 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||||||||| Sbjct 554263 TTTTACAAAAATTTGCAT 554246 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||| || |||||||| || Sbjct 554670 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554611 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || |||||||| ||||| ||| | ||||| ||||| |||| | || || Sbjct 554610 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTT-TAGCTTT 554552 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||| || | ||||||| | || || || | || Sbjct 554551 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554492 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||||||||| Sbjct 554491 TTTTACAAAAATTTGCAT 554474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| | || ||||| ||||| |||||||| |||| || ||| | | | Sbjct 554914 TAAG-ACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGT 554856 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 | || |||||||| || || | || |||||||| ||||| ||| | |||||||| | Sbjct 554855 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGT 554796 Query 18232 CGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | |||| | |||| || | | ||| ||||| | ||| || | ||||||| Sbjct 554795 CCTGTATTT-TAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554737 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | |||||||||||||||||||| Sbjct 554736 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| |||||||| |||| || ||| | | ||| || |||||||| || Sbjct 553758 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553699 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || | || |||||||| ||||| ||| | ||||| ||||| |||| | || || Sbjct 553698 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTT-TAGCTTT 553640 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| | ||| || | ||||||| | || || || | || Sbjct 553639 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553580 Query 18308 TTTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 553579 CTTCACAAAAATTTGCAT 553562 >seq19 Length=2400328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| | || || || || || ||||||||||| |||| | ||| || Sbjct 232933 TACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 232874 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || || || | ||| || || || |||||||| || | ||||||||||| | Sbjct 232873 CAACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTATCCTC 232814 Query 18236 AATTTGTTGCTTGACCTGTGC-AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| ||| || | | | | || || || | ||| || | ||||||| ||| Sbjct 232813 AATTT-TTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTT 232755 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| ||||||||||| || | ||||||||| Sbjct 232754 TTCCGGTTAATGTTTTTACGAATACTTGCATTTT 232721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343870548860