Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 9e-16 >seq27 Length=1720986 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || || |||||| | || || || | ||| Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| |||||||||||| | || || || ||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || || | || || |||||| ||| Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||||||||| || Sbjct 554198 ATCCAAAAAGAATCCAC 554214 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || || |||||| | || || || | ||| Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| |||||||||||| | || || || ||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || ||| | || || |||||| ||| Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||| ||||| || Sbjct 554882 ATCCAAAAGGAATCCAC 554898 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || |||||| | || || || | ||| Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || || | || || |||||| ||| Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||||||||| || Sbjct 553742 ATCCAAAAAGAATCCAC 553758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || || |||||| | || || || | ||| Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || || | || || |||||| ||| Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||||||||| || Sbjct 553970 ATCCAAAAAGAATCCAC 553986 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || || |||||| | || || || | ||| Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || || | || || |||||| ||| Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||||||||| || Sbjct 554426 ATCCAAAAAGAATCCAC 554442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || || || |||||| | || || || | ||| Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| || || || | || || |||||| ||| Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 31373 ATTCAAAAAGAATCGAC 31389 || ||||||||||| || Sbjct 554654 ATCCAAAAAGAATCCAC 554670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766243981760