Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq27 246 4e-60 seq24 158 2e-33 >seq27 Length=1720986 Score = 246 bits (272), Expect = 4e-60 Identities = 820/1252 (65%), Gaps = 34/1252 (3%) Strand=Plus/Minus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT---TCCGGGCTA 62735 ||| | ||||| || ||||| || || | ||||||| |||| ||| || | Sbjct 632151 GCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAATCTGAT--- 632095 Query 62736 TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 ||| |||| || | |||| || || || | ||| || ||||| || || || ||||| || Sbjct 632094 TCATATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTAT 632036 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 |||||| |||||||| || || |||||||| ||| ||| || ||||| | || || Sbjct 632035 AGGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAAT 631976 Query 62855 AATTTTATTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 |||| | | | ||| || ||| | ||| | || | ||| || ||||| | Sbjct 631975 TATTTGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGA 631917 Query 62914 ATCGCCC---ATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 || || ||||| ||||| || ||| || | ||| |||| ||||| |||| Sbjct 631916 ATTCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGG 631857 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | || || | | | ||||| || |||||| || || |||||||| || || | Sbjct 631856 CCACTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCG 631797 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | |||||||||| |||||| ||| |||||| | ||||||||| || ||| | ||| Sbjct 631796 TACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAA 631737 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 63147 || ||||| |||||| | | ||| || ||| | || | || || | | Sbjct 631736 CCCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTT- 631678 Query 63148 ATTTGTATCT---CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCC 63204 ||| || | || | ||| | | ||| ||| | |||||| || | |||| Sbjct 631677 -TTTTTACCCATACCCTCCTCCT-CATATTTTAAATATAGCTTTTCGAATTCTGCACCCC 631620 Query 63205 AAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63264 | | || | |||||||||| ||| |||||||| | ||| | | || |||| Sbjct 631619 ATGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCT 631560 Query 63265 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTA 63323 | |||| |||||||| || ||||| | ||| | ||| ||| || |||||||| | ||| Sbjct 631559 TTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTT 631501 Query 63324 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63383 |||| || || || ||| || |||||| | ||| | | |||||| ||||||||| Sbjct 631500 AGTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCAC 631441 Query 63384 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63443 ||||| | || | || | | ||| || || || || || |||| |||||| Sbjct 631440 GGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTA 631381 Query 63444 GCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATATACCATTGGTACC 63502 || || | |||| | ||||||| |||||| | |||| ||||| ||||| ||||| || || Sbjct 631380 GCTGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCC 631322 Query 63503 GGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63561 || | || | | | | ||||| | || || || || || || || Sbjct 631321 TCTAATGTAAGAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTG 631263 Query 63562 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA 63621 |||| || | ||||| |||||| || || | |||||||| || ||| Sbjct 631262 TTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATT 631203 Query 63622 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGG 63681 ||||| ||| |||||||| |||||||||| | | | || || | ||| || |||| Sbjct 631202 TCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGG 631143 Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741 |||| | ||||||||||| | || | ||| | |||| ||||||||| | ||| | Sbjct 631142 TAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTT 631083 Query 63742 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 | | ||| ||| | ||| || || | | || | ||| | | || || ||||| ||| Sbjct 631082 CCAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCA 631024 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 | ||| || |||||| | | ||||||| ||||||| ||||| || ||||| || Sbjct 631023 ATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAA 630964 Query 63861 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | || ||||| |||||| |||| ||| || || || ||||||| Sbjct 630963 TCATAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 158 bits (174), Expect = 2e-33 Identities = 359/535 (67%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 ||||| || | |||||||| ||||||| || |||||||| | | | ||||| Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCTGCTTT 1241279 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 |||| |||||| |||| | ||| ||| ||| || || || ||||| ||| Sbjct 1241278 TTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCATTC 1241219 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 || | | || || || | | |||| | ||||||||| |||||| || Sbjct 1241218 GCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCACAGAGCT 1241159 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 || || || ||| || || | || || || | ||| |||| || | || || | Sbjct 1241158 TTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCTTCTCA 1241099 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || | || | || || || | ||||| | ||||||||||| ||||||| ||| Sbjct 1241098 TCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACGGCA 1241039 Query 33903 ATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTCT-GTACAAAATCGTT 33960 ||||| || || ||| ||| ||||| || || ||||||| ||| ||| | | | Sbjct 1241038 ATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAATTTGCT 1240980 Query 33961 CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1240979 C-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTTTA 1240921 Query 34021 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 34080 | || | |||||| | | ||| ||| | |||| || | ||| | || | || | Sbjct 1240920 TGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAA 1240861 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 34135 ||| || ||||||| || || || || || || || || | || ||| | ||| Sbjct 1240860 TTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCAAACGTC 1240806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817379563840