Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq27 306 3e-78 seq24 120 3e-22 >seq27 Length=1720986 Score = 306 bits (338), Expect = 3e-78 Identities = 987/1511 (65%), Gaps = 27/1511 (2%) Strand=Plus/Minus Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA-TATATA 37176 |||||| ||| || || || || ||| |||||| | || | || ||| || || Sbjct 632465 TCAATAAGTGGGGGTTCACCACAAAAAATTCTCCACTCAGAACCCGCCT-GTAGTAAATG 632407 Query 37177 TTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTA 37236 || || || |||||||||| ||||||||| || | | || || || || || |||||| Sbjct 632406 TTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGAAGCAGTA 632347 Query 37237 GGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGT 37296 |||||||| |||| ||||| |||||||||||| ||| | || ||| | | ||| ||| Sbjct 632346 GGCATTGGAGCTAAAAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTTCTTTCAGT 632287 Query 37297 TCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAAT 37352 | || ||| ||||| | | | || | || | ||||||||| | || ||||| Sbjct 632286 TTATCCCAGTCCCA-ATACTTATTATCCACCTTCACATTCCACATATCGAACTGAAGAAT 632228 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 || | || |||||| | | | ||| || || ||||||||||| |||| || | ||| Sbjct 632227 TCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTGTGCCAATTC 632168 Query 37413 GCAACTAGAT-TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 || | || || || || |||||||| ||||||||||||||| | |||||||| || Sbjct 632167 -CATGGACATCTCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTT 632109 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 |||| || || ||| || | | || || || || ||||| ||||| | Sbjct 632108 TTGCAGAATCTGATTCATATGGGTATCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTA 632049 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAAT 37591 | || |||||||| ||||| ||| |||| || |||| | ||| || || || | Sbjct 632048 CTCCTATACCTATAGGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGT 631989 Query 37592 AATTGATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTATTCTCAAC 37650 |||| | || ||||||| | | | || | || | ||||| |||||| || | Sbjct 631988 AATTCCTTTCAATTATTTGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGC 631930 Query 37651 TTGTCGAACATAAATACGTTATTAT-TA-----ACAAATTTACTCAACGAAATAGATCCT 37704 || | || | ||| | | |||| || |||||||| | ||||| ||||| | Sbjct 631929 TTCTTAAAATTGAATTCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCC 631870 Query 37705 AGATTACATACAGCAACTTCATCTTCGTTA-CTAAATTGTATAATCTCTGTACAGAGATT 37763 | |||||||| || ||||| || | || | || ||| || ||||| ||| || || Sbjct 631869 AAGTTACATACGGCCACTTCGTC-TGGTGATGTATATTCAATGATCTCACAACACAGGTT 631811 Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823 ||| || | || || || ||||| ||||||| || || ||||||||||| ||||| Sbjct 631810 ACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATA 631751 Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883 || || ||||| ||| |||||| ||| || | ||||| ||||| | | Sbjct 631750 CAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTG 631691 Query 37884 TGCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAA 37943 |||| || | |||| | || || |||| || ||||| || | || Sbjct 631690 TGCTAGTACTGTTTTTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAA 631631 Query 37944 ATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTC 38003 || |||||| || | ||| ||||||||||| || ||||| | || ||| | Sbjct 631630 TTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATT 631571 Query 38004 TTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATC 38063 || | || | ||| | | |||||| | ||||||||||||| ||| || | ||| Sbjct 631570 TTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGCATAGAAAAGATC 631511 Query 38064 TTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATAT 38122 | | | ||| |||||| ||||| ||| ||| ||| | | ||| || || |||| Sbjct 631510 TCTAGCTCTTAGTTCTTCCTTCCCATGATT-TTTACGAAGATCCAAAAACTCAAAAATAT 631452 Query 38123 CAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGAT 38182 | | ||||| ||||| ||||| | | | | ||| || || | || || || | Sbjct 631451 CTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGT 631392 Query 38183 TAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGC 38242 | ||||||| |||| | |||| | | ||| | ||| ||||||| || || ||| | | Sbjct 631391 CTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTACTAATCCGTTGGATATTC 631332 Query 38243 CGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTC 38302 | || | || || |||| | | ||| |||| || | | ||| || | Sbjct 631331 CATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATATCCTGTACTGCTACTCCAATAC 631272 Query 38303 CACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT- 38360 |||| || ||||||| | || | ||||| ||||||| || || || || ||||| || Sbjct 631271 CACCAGC-TGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATC 631213 Query 38361 -ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419 | | | || || || || | |||||| ||||||||| || ||| || || | Sbjct 631212 GAATCTGAT--TTCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAG 631155 Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTT 38479 || || || ||||| | ||| || | || | || | |||| || || || | Sbjct 631154 AATTGAACAAGGTAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCT 631095 Query 38480 CTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTT 38539 ||| | | || | ||| || || ||||| | ||||| ||||| || | ||||| Sbjct 631094 CTAACGCTTTTTCCAGATCTCCAATATGGATACCGATGGATACTCTCATCAGTAGATGTT 631035 Query 38540 GTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTA 38599 ||||||| || || || || ||| | ||| || || ||| |||| || ||||| | Sbjct 631034 GTGGTCTCTCAATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGA 630975 Query 38600 TTCCAAAATAA 38610 |||||| ||| Sbjct 630974 ATCCAAAGTAA 630964 >seq24 Length=1435464 Score = 120 bits (132), Expect = 3e-22 Identities = 335/506 (66%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 11645 TGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA-TCC 11703 ||||| || || || | ||| |||||||| ||| ||||| | ||| | | | | | Sbjct 1241344 TGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTC 1241285 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 | | ||||| | |||||| || ||| || ||| ||| || || ||||| ||| Sbjct 1241284 T-GCTTTTTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACA 1241226 Query 11764 TGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCA 11823 ||| ||||||| ||||| || | || || |||||| || ||||| Sbjct 1241225 CGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCA 1241166 Query 11824 ATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTC 11883 |||||| || || || || | || ||||||| ||||| || |||| | || Sbjct 1241165 CAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTC 1241106 Query 11884 TATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTC 11943 | | ||| ||| || | |||||||| || ||||| | || |||||||||||||| Sbjct 1241105 CTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTC 1241046 Query 11944 CATAGCTATTTGAAATCCATAGAAACATC-GTGCCTCTGAACACTGTACATCCACATAAA 12002 | || || || || ||| ||| || |||||| | || || | | |||| Sbjct 1241045 AACGGCAATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCAC-TTGGCGTAAA 1240988 Query 12003 ATCTTTC-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATA 12061 | || | ||||||||| || || || |||||||| | ||||||||| || | | | Sbjct 1240987 AATTTGCTCGCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACA 1240928 Query 12062 TGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGAT 12121 |||||||| |||| |||||| | || | ||||||| || |||| | |||||| | || Sbjct 1240927 TGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGAC 1240868 Query 12122 AAATCTACTTCTTCAACGGTCCAAAA 12147 || || | ||| ||| | ||||| || Sbjct 1240867 AAGTCAATTTCCTCAGCTGTCCAGAA 1240842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524636016320