Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq27 255 8e-63 seq24 165 1e-35 >seq27 Length=1720986 Score = 255 bits (282), Expect = 8e-63 Identities = 823/1252 (66%), Gaps = 34/1252 (3%) Strand=Plus/Minus Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA--T 65529 ||| | ||||| || |||||||| || | ||||||| |||| ||| | || | Sbjct 632151 GCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAG--AATCTGATT 632094 Query 65530 CAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 65588 || |||| || | |||| || || || | |||||| ||||| || || || ||||| ||| Sbjct 632093 CATATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATA 632035 Query 65589 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 65648 ||||| |||||||| || || |||||||| ||| ||| || ||||| | || || Sbjct 632034 GGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATT 631975 Query 65649 ATTTTATTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 65707 |||| | | | ||| || ||| | ||| | || | ||| || ||||| || Sbjct 631974 ATTTGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAA 631916 Query 65708 TCGC---TCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGC 65761 | | | ||||| ||||| || ||| || | ||| |||| ||||| ||||| Sbjct 631915 TTCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGC 631856 Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 || || | | | ||||| || |||||| || || |||||||| || || || Sbjct 631855 CACTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGT 631796 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 |||||||||| |||||| ||| |||||| | ||||||||| || ||| | ||| Sbjct 631795 ACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAAC 631736 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 65941 || ||||| |||||| | | ||| || ||| | || | || || | | Sbjct 631735 CCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTT-- 631678 Query 65942 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA-ATCGTT-CGAACTCGTCTCCCCAA 65999 ||| || | | ||| | | ||| | || | | | | || |||| || | ||||| Sbjct 631677 TTTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCAT 631618 Query 66000 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 66059 | || || |||||||||| ||| |||||||| | ||| | | || ||||| Sbjct 631617 GACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCTTT 631558 Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATG 66118 |||| |||||||| || ||||| | ||| | ||| ||| | || |||||| | ||| | Sbjct 631557 ACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTTAG 631499 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||| || || || ||| || |||||| | ||| | | |||||| |||||||||| Sbjct 631498 TTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGG 631439 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 66238 ||| | || | || | | ||| || || || || || |||| |||||||| Sbjct 631438 TTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAGC 631379 Query 66239 GGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTCCCGG 66297 || | |||| | ||||||| |||||| | |||| || |||||| | ||||| || || Sbjct 631378 TGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCCTC 631320 Query 66298 AGATAT-AGCTTCCACTTG--CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 66354 || | || | ||| | | ||||| | || || || || || || || Sbjct 631319 TAATGTAAGAAT---TTTGTCCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTG 631263 Query 66355 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 66414 |||| || | ||||| |||||| || || | ||||| || || ||| Sbjct 631262 TTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATT 631203 Query 66415 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 66474 ||||| ||| |||||||| |||||||||| | | || || | ||| || |||| Sbjct 631202 TCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGG 631143 Query 66475 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 66534 |||| | ||||||||||| | || | ||| | |||| ||||||||| | ||| | Sbjct 631142 TAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTT 631083 Query 66535 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 | | ||| ||| | ||| || || | | || | ||| | | || || ||||| ||| Sbjct 631082 CCAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCA 631024 Query 66594 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 66653 | ||||| |||||| | | ||||||| ||||||| ||||| || ||||| || Sbjct 631023 ATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAA 630964 Query 66654 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 | || ||||| |||||| |||| ||| || ||| ||| ||||||| Sbjct 630963 TCATAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 165 bits (182), Expect = 1e-35 Identities = 372/551 (68%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||||| ||||| || | |||||||| |||||| || |||||||| | Sbjct 1241353 AAATCTGTGTGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGT 1241294 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCC 36282 | | ||||||||| |||||| |||| | || || |||| ||| ||||| || Sbjct 1241293 AACTTGTTCTGCTTTTTAAACCAAAAAATGG-CACAGAAACTTCCACTAAATAAAATACC 1241235 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||||| |||| || | | || || || | | |||| | ||||||||| Sbjct 1241234 CTCTACACACGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTT 1241175 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 |||||| || || || || ||| || || |||| ||||| | ||| |||| Sbjct 1241174 GGCAGCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATT 1241115 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 || | || || ||| || | || | || || || | ||||| | |||||||| Sbjct 1241114 CATTCTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATG 1241055 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTT 36521 ||| ||||||| ||| || || || || ||| ||| ||||| || || || |||| Sbjct 1241054 AATATTTTCAACGGCAATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTT 1240996 Query 36522 CT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| ||| | | || ||||||||||| ||||||||| ||||||||||||||||| Sbjct 1240995 GGCGTAAAAATTTGCTC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAG 1240937 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 ||||| ||||||||||| || | |||||| ||| ||| ||| | |||| || | | Sbjct 1240936 GCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAA 1240877 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || | || | || | ||| || ||||||| || || || || || || || || | | Sbjct 1240876 TCGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAA 1240817 Query 36701 TTCCAGATGTC 36711 | ||| | ||| Sbjct 1240816 TCCCAAACGTC 1240806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172569639520