Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq27 315 1e-80 seq24 156 6e-33 >seq27 Length=1720986 Score = 315 bits (348), Expect = 1e-80 Identities = 1013/1542 (66%), Gaps = 39/1542 (3%) Strand=Plus/Minus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||||||| || || | || |||||| ||||| || |||||||| | || || Sbjct 632440 AAATTCTCCACTCAGAACCCGCCTGTAGTAAATGTTACTCGTGTATGGTTCAAAGGACTC 632381 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-T 79183 ||| || || | ||| || | || || || || ||||| || || | || || | | | Sbjct 632380 ATTGTTGCCAAGAATCTGTGACGTCGAAGCAGTAGGCATTGGAGCTAA-AAGAAGCGAAT 632322 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243 |||| | |||| | | ||||| ||||| || ||||| |||||| | | Sbjct 632321 TTCTCAATCCGTGTTTCTTTATTTTTTCTTTCAGTTTATCCCAGTCCCAATACTTATTAT 632262 Query 79244 GGACA---ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCCTGTG 79299 || |||||||| | ||| | || ||||| || | ||||| | | | |||| Sbjct 632261 CCACCTTCACATTCCACATATCGAACTGAAGAATTCCCTGGCTAGCTGGACTACCCTGA- 632203 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || ||||| |||||||| | ||| || ||||| | ||| | || | ||| Sbjct 632202 TAGGTTTCGTAAGGTCCGTATATTTGTGCCAATTCCATGGACATCTCCAGAGCAGCATAA 632143 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCTAGGCTATCAAATGGA 79416 || || ||||||||||| | ||||| | |||| ||| ||| | | ||| |||| Sbjct 632142 TACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAATCT--GAT-TCATATGGG 632086 Query 79417 TAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 || | |||| || || || | |||||| ||||| || || || ||||| |||||||| || Sbjct 632085 TA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATAGGTCTGTG 632027 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 |||||| || || |||||||| ||| ||| || ||||| | || || |||| | Sbjct 632026 TCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATTATTTGGTC 631967 Query 79536 GAGATTCCTGACTATTACTTTGACCACATCCTTT-AGTTTGAGAAAATCAAAT---CGTC 79591 | |||| || || || ||| | | | | || || ||||| ||| | | Sbjct 631966 CAAGTTCC-GAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAATTCCCTTT 631908 Query 79592 CATCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 ||||| ||||| || |||||||| ||| |||| ||||| ||||| || || | Sbjct 631907 TATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGCCACTTCGT 631848 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | | ||||| || || ||| || ||||||||||| || || || ||||||| Sbjct 631847 CTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGTACCTAAAT 631788 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 ||| |||||| ||| |||||| | ||||||||| || ||| ||||| || |||| Sbjct 631787 TTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTT 631728 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATC 79828 | |||||| | | ||| || ||| | || | || || | | || || | Sbjct 631727 CTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTTT--TTTTACC 631670 Query 79829 TCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | ||| | || |||| | ||||| |||||| || | ||||| || Sbjct 631669 CATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCATGACTCACT 631610 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 ||| || |||||||| | || |||||||| | ||| | | | |||||||||| || Sbjct 631609 TAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCTTTACTCTCTT 631550 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 80005 |||||| || ||||| | ||| | ||| ||| || |||||||| | ||| | || || | Sbjct 631549 CATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTTAGTTCTTCCT 631491 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 | || ||| || |||||| | ||| | | |||||| |||||||||||||| | | Sbjct 631490 TCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGGTTCGATAT 631431 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 | | || | | |||| | || || || || |||| |||||||| || | || Sbjct 631430 ACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCAT 631371 Query 80126 TATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATAT-A 80183 || | ||||||| |||||| | |||| || |||||| | ||||| || || || | | Sbjct 631370 TAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCCTCTAATGTAA 631312 Query 80184 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 | | | | | ||||| | || || || || || || || |||| || Sbjct 631311 GAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTGTTTTGCTAAT 631253 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | ||||| |||||| || || | ||||| || || ||| ||||| ||| Sbjct 631252 CAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTTCATGCAAAG 631193 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 |||||||| |||||||||| | | || || | ||| || |||||||| | || Sbjct 631192 GAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGC 631133 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CC 80422 ||||||||| | || | ||||| |||| ||||||||| | ||| ||| | ||| || Sbjct 631132 GTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTCCAGATCTCC 631073 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | | ||| || || | | || | ||| | | || || ||||| |||| ||||| Sbjct 631072 AAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAATAATCTTTC 631014 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 80540 ||||||| | | ||| ||| ||||||| ||||| || ||||| || | || ||| Sbjct 631013 CATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAATCATAATTGA 630954 Query 80541 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 || |||||| |||| ||| || ||| ||| ||||||| Sbjct 630953 AA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 156 bits (172), Expect = 6e-33 Identities = 361/536 (67%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 49981 CCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 50040 ||||| || | ||||||||||||||| || |||||||| | | | ||||| Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCTGCTTT 1241279 Query 50041 TTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAA 50099 |||| |||||| |||| | || || ||| ||| || || || ||||| ||| Sbjct 1241278 TTAAACCAAAAAATGG-CACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCATT 1241220 Query 50100 GGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGC 50159 || || | || || || | | |||| | ||||||||| |||||| || Sbjct 1241219 CGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCACAGAGC 1241160 Query 50160 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 50219 || || || ||| || || | || || || | ||| |||| || | || || Sbjct 1241159 TTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCTTCTC 1241100 Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| || | || | || || || | ||||| | ||||||||||| ||||||| ||| Sbjct 1241099 ATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACGGC 1241040 Query 50280 CATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTCT-GTACAAAATCGT 50337 ||||| || || ||| ||| ||||| || || ||||||| ||| ||| | | Sbjct 1241039 AATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAATTTGC 1240981 Query 50338 TCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 50397 || ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 1240980 TC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTTT 1240922 Query 50398 ATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCT 50457 || || |||||||| || ||| ||| | |||| || | ||| | || | || Sbjct 1240921 ATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCA 1240862 Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 | ||| || ||||||| || || || || || || || || | || ||| | ||| Sbjct 1240861 ATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCAAACGTC 1240806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268548605920