Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq27 109 4e-19 >seq27 Length=1720986 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| ||||| || | ||| |||||||| | |||||||||||||| || | | |||| Sbjct 554914 TAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTC 554855 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | |||||| || || Sbjct 554854 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTC 554795 Query 43017 GCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| || |||| || | ||| |||||| | ||| || || | || || | Sbjct 554794 -CTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 554736 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| ||||| |||||||||||||| Sbjct 554735 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || ||||| | |||||||||||||| || | | | || Sbjct 553774 TAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATC 553715 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | ||||||||| || Sbjct 553714 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATC 553655 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| |||||| | ||| || || | || || || Sbjct 553654 TTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGT 553595 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || ||||||||||||||||| Sbjct 553594 CTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || ||||| | |||||||||||||| || | | | || Sbjct 554002 TAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATC 553943 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | ||||||||| || Sbjct 553942 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATC 553883 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| |||||| | ||| || || | || || || Sbjct 553882 TTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGT 553823 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| ||||| |||||||||||||| Sbjct 553822 CTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || ||||| | |||||||||||||| || | | | || Sbjct 554230 TAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATC 554171 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | |||||| || || Sbjct 554170 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTC 554111 Query 43017 GCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075 ||| || |||| || | ||| |||||| | ||| || || | || || | Sbjct 554110 -CTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 554052 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| ||||| ||||| |||||||||||||| Sbjct 554051 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || ||||| | |||||||||||||| || | | | || Sbjct 554458 TAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATC 554399 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | ||||||||| || Sbjct 554398 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATC 554339 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| |||||| | ||| || || | || || || Sbjct 554338 TTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGT 554279 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| ||||| |||||||||||||| Sbjct 554278 CTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || ||||| | |||||||||||||| || | | | || Sbjct 554686 TAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATC 554627 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || |||||||| ||||| ||||| | || || ||||| | || | ||||||||| || Sbjct 554626 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATC 554567 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| |||||| | ||| || || | || || || Sbjct 554566 TTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGT 554507 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| ||||| |||||||||||||| Sbjct 554506 CTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369469857624