Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq27 293 3e-74 seq24 136 5e-27 >seq27 Length=1720986 Score = 293 bits (324), Expect = 3e-74 Identities = 830/1249 (66%), Gaps = 36/1249 (3%) Strand=Plus/Minus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCCGGGCTATCAA 71494 ||||||| || ||||||||||| | ||||| | |||| ||| || | ||| Sbjct 632147 CATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAGAATCTGAT---TCAT 632091 Query 71495 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 |||| || | |||| || || || | |||||| ||||| || || || ||||| |||||| Sbjct 632090 ATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATAGGT 632032 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 ||||||||||| || || |||||||| ||| ||| || ||||| | || || ||| Sbjct 632031 CTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATTATT 631972 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTT-AGTTTGAGAAAATCAAATCT 71672 | | | | ||| || || || ||| | | | | || || ||||| ||| | Sbjct 631971 TGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAAT-T 631914 Query 71673 CCCATCTAT-TACAA--ACACGTT----CAAGGCAACAGATGCCAGATTACAAACGGCTA 71725 ||| | ||| |||| ||| || ||| || | ||| |||| ||||| ||||| | Sbjct 631913 CCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGCCA 631854 Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785 | || | | | ||||| || || ||| || || |||||||| || || || | Sbjct 631853 CTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGTAC 631794 Query 71786 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTAC 71845 ||||||||| |||||| ||| |||||| | ||||||||| || || ||||| | Sbjct 631793 CTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAACCC 631734 Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TATTC 71904 | ||||| |||||| | | ||| || ||| | || | || || || | || Sbjct 631733 CTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGC---TAGTACTGTTT 631677 Query 71905 TTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 || || | | ||| | || |||| | ||||| |||||| || | ||||| | Sbjct 631676 TTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCATG 631617 Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 | ||| || |||||||||||||| |||||||| | ||| | | | || |||| Sbjct 631616 ACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCTTTA 631557 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGC 72081 ||| |||||||| || ||||| | ||| | ||| ||| || |||||||| | ||| | Sbjct 631556 CTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTTAGT 631498 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || ||| || |||||| | ||| | | |||||| |||||||||||| Sbjct 631497 TCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGGT 631438 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || | || | | |||| || || || || || |||| |||||||| Sbjct 631437 TCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAGCT 631378 Query 72202 GTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGGTCCCGGA 72260 || | |||| | ||||||| |||||| | |||| || |||||| ||||| || || Sbjct 631377 GTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCCTCT 631319 Query 72261 GATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 || | || | | | | ||||| | || || || || || || || ||| Sbjct 631318 AATGTAAGAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTGTTT 631260 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | || | ||||| |||||| || || | ||||| || || ||| ||| Sbjct 631259 TGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTTCA 631200 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 || ||| |||||||| |||||||||| | | || || | ||| || ||||||| Sbjct 631199 TGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAG 631140 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 72499 | | ||||||||||| | || | ||||| |||| ||||||||| | ||| ||| | Sbjct 631139 GTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTCCA 631080 Query 72500 TATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 ||| ||| | ||| || || | | || | ||| | | ||| || ||||| |||| Sbjct 631079 GATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAATA 631021 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 ||||| ||||||| | | ||||||| ||||||| ||||| || ||||| || | Sbjct 631020 ATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAATCA 630961 Query 72619 TA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || ||||| |||||| |||| ||| || || ||| ||||||| Sbjct 630960 TAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 136 bits (150), Expect = 5e-27 Identities = 353/530 (67%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 |||||||| | |||||||| |||||| || |||||||| | | | ||||| Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCTGCTTT 1241279 Query 42146 TTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAA 42204 |||| |||||| || | | || || |||| ||| || || || ||||| |||| Sbjct 1241278 TTAAACCAAAAAATGG-CACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCATT 1241220 Query 42205 GGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 || | | || || || | | |||| | ||||||||| |||||| || Sbjct 1241219 CGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCACAGAGC 1241160 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 || || || ||| || || | || || || | ||| |||| || | || || Sbjct 1241159 TTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCTTCTC 1241100 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| || | || | || || || | ||||| | || |||||||| ||||||| ||| Sbjct 1241099 ATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACGGC 1241040 Query 42385 CATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTTCT-GTACAAAATCGT 42442 ||||| || || ||| ||| ||||| || | || |||| ||| ||| | | Sbjct 1241039 AATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAATTTGC 1240981 Query 42443 TCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 42502 || ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 1240980 TC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTTT 1240922 Query 42503 ATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCT 42562 || || | |||||| | ||||||| | |||| || | ||| | || | || Sbjct 1240921 ATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCA 1240862 Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 | ||| || | ||||| || || ||||| || || || || | || ||| Sbjct 1240861 ATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCA 1240812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138965101280