Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq27 145 6e-30 >seq27 Length=1720986 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| |||||||| | |||||| |||||||| |||||||||||| Sbjct 554016 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 553957 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| | || | | ||| || || ||| Sbjct 553956 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 553897 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| |||||| |||| || || ||| ||||| Sbjct 553896 ATACCTTCTTTATCTTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 553838 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || ||||||||||||||||||||| Sbjct 553837 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 553789 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| |||||||| | |||||| |||||||| |||||||||||| Sbjct 554244 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554185 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| | || | | ||| || || ||| Sbjct 554184 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554125 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||||| ||| |||||| |||| || || ||| ||||| Sbjct 554124 ATACCTTCCTTGTCCTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 554066 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || ||||||||||||||||||||| Sbjct 554065 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554017 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| |||||||| | |||||| |||||||| |||||||||||| Sbjct 554472 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554413 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| | || | | ||| || || ||| Sbjct 554412 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554353 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| |||||| |||| || || ||| ||||| Sbjct 554352 ATACCTTCTTTATCTTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 554294 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || ||||||||||||||||||||| Sbjct 554293 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554245 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| |||||||| | |||||| |||||||| |||||||||||| Sbjct 554700 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 554641 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| | || | | ||| || || ||| Sbjct 554640 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554581 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| |||||| |||| || || ||| ||||| Sbjct 554580 ATACCTTCTTTATCTTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 554522 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || ||||||||||||||||||||| Sbjct 554521 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554473 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| |||||||| | |||||| |||||||| |||||||||||| Sbjct 553788 CCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGAC 553729 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || ||||||||||| || ||| | || | | ||| || || ||| Sbjct 553728 AAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 553669 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| |||||| |||| || || ||| ||||| Sbjct 553668 ATACCTTCTTTATCTTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 553610 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || || || ||||||||||||||| Sbjct 553609 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCATA 553561 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| || || || | |||||| || ||||| |||||||||||| Sbjct 554928 CCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGAC 554869 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| |||| ||||||||||| || ||| | || | | ||| || || ||| Sbjct 554868 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554809 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||||| ||| |||||| |||| || || ||| ||||| Sbjct 554808 ATACCTTCCTTGTCCTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 554750 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| ||||| || || || || ||||||||||||||||||||| Sbjct 554749 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554701 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | ||| ||||| || | |||||| || ||||| |||||||| ||| Sbjct 553560 CCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 553501 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| |||| ||||||||||| || ||| | || | | ||| || ||| ||| Sbjct 553500 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGA 553441 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || ||||| ||| |||||| |||| || || ||| ||||| Sbjct 553440 ATACCTTCTTTATCTTGTATTTTAGCT-TTTACATTTTCAATCGTGTCGGATGACTCTAC 553382 Query 15316 ATCTAAGGTAATGGTTTTACCTG 15338 ||| ||||| ||||| || |||| Sbjct 553381 ATCCAAGGTGATGGTCTTTCCTG 553359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179076406348