Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq24 102 7e-17 >seq24 Length=1435464 Score = 102 bits (112), Expect = 7e-17 Identities = 361/554 (65%), Gaps = 15/554 (3%) Strand=Plus/Minus Query 13145 ATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204 |||| ||| |||||| ||| ||||| ||||| | ||| ||||| ||||| ||| Sbjct 1241365 ATCAGACAATTAAAATCTGTGTGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAAT 1241306 Query 13205 GTTAGACCCGGCATAA---GCCCTCGTTTTTTAATCCAAAATATAGCAGC-AAACGAACC 13260 || || || | ||| | || | ||||||| |||||| || ||| |||| | Sbjct 1241305 GTGAGTCCATG--TAACTTGTTCT-GCTTTTTAAACCAAAAAATGGCACAGAAACTTCCA 1241249 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 | ||| ||| || || || || ||| ||||| | |||||| || | | | | Sbjct 1241248 CTAAATAAA-ATACCCTCTACACACGCATTCGCTACTATCCTTTCGGCAAAGG----AGT 1241194 Query 13321 TTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | || | ||||||||| ||||| ||||| | || || | || || | Sbjct 1241193 TCGTGTCGTTTATCCACTTGGCAGCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCT 1241134 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | || |||| ||||| || || | ||||| || || || | ||||| || | Sbjct 1241133 CAATAGCGTGAAATAGATTCATTCTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACA 1241074 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 ||||||| | || |||||||||||||| | || || ||||| |||||| | | Sbjct 1241073 AGCTATAGGTCTCCGAATGAATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTG 1241014 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCG 13558 |||| | || || |||| || |||||| || || ||||| ||||| ||||| || Sbjct 1241013 CCTCCGTTATTTGCACTT-GGCGTAAAAATTTGCTCGCTAAATTTTCCAACACTATTCCA 1240955 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC 13618 ||||| || |||||||| || | | || || || || | |||||| ||||| || Sbjct 1240954 TCACTGGCTGCAAAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAAT 1240895 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCA 13678 ||| ||||| ||||| | || || || | |||||| | ||||| || || || Sbjct 1240894 TTTTCGAAATCTTTTAAATCGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCT 1240835 Query 13679 ACAGCCTTCTTATA 13692 | || ||||| || Sbjct 1240834 TCCGCTTTCTTGTA 1240821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982252927256