Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq27 152 1e-31 seq19 107 4e-18 >seq27 Length=1720986 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| |||||| || |||||||| || || || || || || | ||||| || | Sbjct 554002 TAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCAT 553944 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || |||||||| || || |||||||||| Sbjct 553943 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTAT 553884 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 553883 CTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 553824 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || ||||| Sbjct 553823 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| |||||| || |||||||| || || || || || || | ||||| || | Sbjct 554458 TAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCAT 554400 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || |||||||| || || |||||||||| Sbjct 554399 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTAT 554340 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 554339 CTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 554280 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || ||||| Sbjct 554279 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| |||||| || |||||||| || || || || || || | ||||| || | Sbjct 554686 TAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCAT 554628 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || |||||||| || || |||||||||| Sbjct 554627 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTAT 554568 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 554567 CTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 554508 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || ||||| Sbjct 554507 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| |||||| || |||||||| || || || || || || | ||||| || | Sbjct 554230 TAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCAT 554172 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || |||||||| || || ||||| || | Sbjct 554171 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGT 554112 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 |||| || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 554111 CCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 554052 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || ||||| Sbjct 554051 TCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 143 bits (158), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| |||||| || |||||||| || || || || || || | ||||| || | Sbjct 553774 TAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCAT 553716 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || |||||||| || || |||||||||| Sbjct 553715 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTAT 553656 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 553655 CTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 553596 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || ||||| || ||||| Sbjct 553595 TCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || || || || | ||||| ||||| |||| |||| Sbjct 554904 TGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAATTGT 554845 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| || ||||| || || || |||||||| || || ||||| || ||||| || || Sbjct 554844 TTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTA 554785 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||||||||| | || ||| | ||||| || | || || ||||| || || Sbjct 554784 GCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTT 554725 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| || ||||| Sbjct 554724 AGGGTTTTTACAAAAATTTGCAT 554702 Score = 122 bits (134), Expect = 2e-22 Identities = 140/187 (75%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| ||||| || ||||| || || || || ||||| || | ||||| |||| Sbjct 553546 TAAG-ACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGT 553488 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 | |||| ||||||||| || ||||| || || || ||||| || || || |||||||||| Sbjct 553487 CCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTAT 553428 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | || || || |||||||||||||| | || ||| | ||||| || | || || | Sbjct 553427 CTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGG 553368 Query 104526 TCTTACC 104532 |||| || Sbjct 553367 TCTTTCC 553361 >seq19 Length=2400328 Score = 107 bits (118), Expect = 4e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || ||||||| | | || | || || | || Sbjct 232926 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGC 232867 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| | | | |||||||||||||||||||| || |||||||| ||||||| ||| ||| Sbjct 232866 TTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTATCCTCAATTTTT 232807 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| ||||| | || ||| | || || || || || || || || || || Sbjct 232806 GATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTT 232747 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||||||| |||| ||||||||| Sbjct 232746 AATGTTTTTACGAATACTTGCATTTTG 232720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397986935824