Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq16 172 7e-38 >seq16 Length=1982946 Score = 172 bits (190), Expect = 7e-38 Identities = 406/607 (67%), Gaps = 31/607 (5%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||| || | || |||| | ||| ||| ||||||| || || Sbjct 1893142 AATTTCAATTTTGAGGAGCTAGGGATAGGAGCACTTGATGAAGAATTTAAAACCATATTT 1893201 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTT--CCTATCGAAATAATaaaaaaaTTAGGCTGTA 164509 |||||| | |||||| |||| | || || | | | ||||| || | ||||| || Sbjct 1893202 AGACGAACCTTTGCTAGTAGA--ATTTACCCGAACTATATAATTAAGCAGTTAGGAATTA 1893259 Query 164510 AACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTC 164569 | ||| | |||||| | | || |||| ||||| ||| || ||||||||||| ||| Sbjct 1893260 AGCATGTTAAAGGACTCATTTTGTATGGGCCTCCGGGTACAGGGAAAACATTAATAGCTA 1893319 Query 164570 GATGCATTGCTCAAGCTTTTAAATCGCG---ACCCGTTAAAATTGTTAATGGTCCTGAAT 164626 | |||| | | || | || || | |||| |||||| |||||||||| ||| Sbjct 1893320 GGCAGATTGGTAAGACTCTGAATGCGAGGGAACCC---AAAATTATTAATGGTCCAGAAA 1893376 Query 164627 TATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTG 164686 |||| || |||||||| || |||| || | || |||| || || ||| | ||||| | Sbjct 1893377 TATTAAATAAATATGTTGGACAGTCTGAGGAGAACATTAGGAACTTATTTAAAGAGGCAG 1893436 Query 164687 AAGAAGAACAAAAGAA-AGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAG 164745 | ||| | ||| | ||| || | | || ||||| |||| |||| |||||| Sbjct 1893437 AGATGGAATATAAGCAGAGC-GGAGAAAATTCACAACTACATATTATCATTTTAGATGAG 1893495 Query 164746 ATAGATGCTCTTTGCAAAAAACGTGGTGATAATATTATTCA--------TGATG------ 164791 || |||||| |||| | | | ||| | | | |||| || || Sbjct 1893496 ATTGATGCTATTTGTCGACAGAGAGGTAGT--TCTGCTTCAAGTGGGACTGGTGTGAACG 1893553 Query 164792 -CAG--TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTT 164848 ||| | |||||||||||||| || ||||| ||||||||| | ||| |||||||| Sbjct 1893554 ACAGCATTGTTAATCAGTTGCTATCGAAAATTGATGGTGTAAATAGCTTGAATAATATAC 1893613 Query 164849 TAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTC 164908 | | | || |||||||||||| ||| ||||| ||||||||| | || |||| || Sbjct 1893614 TGCTGATCGGGATGACCAACCGAATTGACTTAATAGATGATGCTCTGTTGAGACCAGGGA 1893673 Query 164909 GATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAA 164968 |||| |||||| | |||||||| ||||| | || || ||| | | |||||||| | Sbjct 1893674 GATTCGAATTGCACATAGAAATTTCTCTACCCAATAAGGAGGGAAGGATACAAATTTTGA 1893733 Query 164969 AAGTTCA 164975 | |||| Sbjct 1893734 ACATTCA 1893740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871791444800