Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq27 116 3e-21 >seq27 Length=1720986 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || || |||| || || || || || || || || ||||| Sbjct 553810 GGTTTTTACAAAAATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTC 553751 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | ||| |||||| || || | |||||| | ||||||||| | || || Sbjct 553750 TTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAAT 553691 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | |||||||||||| || |||||||||||||| || | ||||| || || || | Sbjct 553690 GAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTC 553631 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||||| | || || || | |||||||| ||||| || || || |||||||| Sbjct 553630 AATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAA 553571 Query 94999 GATCTGCAT 95007 || ||||| Sbjct 553570 AATTTGCAT 553562 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || || |||| || || || || || || || || ||||| Sbjct 554038 GGTTTTTACAAAAATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTC 553979 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | ||| |||||| || || | |||||| | ||||||||| | || || Sbjct 553978 TTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAAT 553919 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | |||||||||||| || |||||||||||||| || | ||||| || || || | Sbjct 553918 GAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTC 553859 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||||| | || || || | |||||||| ||||| || || ||||| ||||| Sbjct 553858 AATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAA 553799 Query 94999 GATCTGCAT 95007 || ||||| Sbjct 553798 AATTTGCAT 553790 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || || |||| || || || || || || || || ||||| Sbjct 554266 GGTTTTTACAAAAATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTC 554207 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | ||| |||||| || || | |||||| | ||||||||| | || || Sbjct 554206 TTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAAT 554147 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | |||||||||||| || ||||||||||| ||||| | ||||| || || || | Sbjct 554146 GAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTC 554087 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||||| | || || || | |||||||| ||||| || || ||||| ||||| Sbjct 554086 AATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAA 554027 Query 94999 GATCTGCAT 95007 || ||||| Sbjct 554026 AATTTGCAT 554018 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || || |||| || || || || || || || || ||||| Sbjct 554494 GGTTTTTACAAAAATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTC 554435 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | ||| |||||| || || | |||||| | ||||||||| | || || Sbjct 554434 TTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAAT 554375 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | |||||||||||| || |||||||||||||| || | ||||| || || || | Sbjct 554374 GAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTC 554315 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||||| | || || || | |||||||| ||||| || || ||||| ||||| Sbjct 554314 AATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAA 554255 Query 94999 GATCTGCAT 95007 || ||||| Sbjct 554254 AATTTGCAT 554246 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || || |||| || || || || || || || || ||||| Sbjct 554722 GGTTTTTACAAAAATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTC 554663 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 ||||| | ||| |||||| || || | |||||| | ||||||||| | || || Sbjct 554662 TTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAAT 554603 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | |||||||||||| || |||||||||||||| || | ||||| || || || | Sbjct 554602 GAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTC 554543 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||||| | || || || | |||||||| ||||| || || ||||| ||||| Sbjct 554542 AATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAA 554483 Query 94999 GATCTGCAT 95007 || ||||| Sbjct 554482 AATTTGCAT 554474 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || || |||||||| || || ||||||||||| | ||| |||||| | Sbjct 554928 CCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGAC 554869 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||| | ||||||||| | || || | |||||||||||| || ||| Sbjct 554868 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554809 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||||| || || || | | ||||| | || || Sbjct 554808 ATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACA 554749 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 554748 TCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || || || || ||||| || || ||||||||||| | Sbjct 553573 AAAAATTTGCATACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGAT 553514 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || || | ||||| | ||||||||| | || || | |||||| Sbjct 553513 GTTGTAGTCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTG 553454 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||| || |||||||||||||| || | ||||| || || || Sbjct 553453 CTGATCGGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTAC 553409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291043098080