Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 4e-15 >seq24 Length=1435464 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| | || ||||| |||||||| | || ||||| || ||||| ||||| Sbjct 1241071 CTATAGGTCTCCGAATGAATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCC 1241012 Query 21827 TCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | ||| || | | | | ||| | | | || || ||||| ||||||||||| Sbjct 1241011 TCCGTTATTTGCACTTGGCGTAAAAATTTGCTC-GCTAAATTTTCCAACACTATTCCATC 1240953 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| |||||||| ||||| | || |||||| || | | ||| || || ||||||| Sbjct 1240952 ACTGGCTGCAAAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTT 1240893 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 || ||||| |||||| | || || || | ||| |||| |||||| ||| Sbjct 1240892 TTCGAAATCTTTTAAATCGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAG 1240841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900613834720