Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq27 257 2e-63 seq24 143 3e-29 >seq27 Length=1720986 Score = 257 bits (284), Expect = 2e-63 Identities = 822/1251 (66%), Gaps = 32/1251 (3%) Strand=Plus/Minus Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA--T 62685 ||| | ||||| || |||||||| || | ||||||| |||| ||| | || | Sbjct 632151 GCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTTTTGCAG--AATCTGATT 632094 Query 62686 CAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62744 || |||| || | |||| || || || | ||| || ||||| || || || ||||| ||| Sbjct 632093 CATATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATA 632035 Query 62745 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62804 ||||| |||||||| || || |||||||| ||| ||| || ||||| | || || Sbjct 632034 GGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATT 631975 Query 62805 ATTTTATTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62863 |||| | | | ||| || ||| | ||| | || | ||| || ||||| || Sbjct 631974 ATTTGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAA 631916 Query 62864 TCGCCC---ATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGC 62917 | || ||||| ||||| || ||| || | ||| |||| ||||| ||||| Sbjct 631915 TTCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGC 631856 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 || || | | | ||||| || |||||| || || |||||||| || || || Sbjct 631855 CACTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGT 631796 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 |||||||||| |||||| ||| |||||| | ||||||||| || ||| | ||| Sbjct 631795 ACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAAC 631736 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63097 || ||||| |||||| | | ||| || ||| | || | || || | | Sbjct 631735 CCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTT-- 631678 Query 63098 TTTGTATCT---CCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63154 ||| || | || | ||| | | ||| | ||| | |||||| || | ||||| Sbjct 631677 TTTTTACCCATACCCTCCTCCT-CATATTTTAAATATAGCTTTTCGAATTCTGCACCCCA 631619 Query 63155 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63214 | || || |||||||||| ||| |||||||| | ||| | | || ||||| Sbjct 631618 TGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCTT 631559 Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63273 |||| |||||||| || ||||| | ||| | ||| ||| || |||||||| | ||| Sbjct 631558 TACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTTA 631500 Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 |||| || || || ||| || |||||| | ||| | | |||||| |||||||||| Sbjct 631499 GTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACG 631440 Query 63334 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63393 |||| | || | || | | ||| || || || || || |||| ||||||| Sbjct 631439 GTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAG 631380 Query 63394 CGGTGTTATTATAAACTCTCAACATTGG-AATAATACCGTTTGATATACCATTGGTACCG 63452 | || | |||| | ||||||| |||||| | |||| ||||| ||||| ||||| || || Sbjct 631379 CTGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCCT 631321 Query 63453 GAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63511 || | || | | | | ||||| | || || || || || || || | Sbjct 631320 CTAATGTAAGAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTGT 631262 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 ||| || | ||||| |||||| || || | || || || || ||| | Sbjct 631261 TTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTT 631202 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 |||| ||| |||||||| |||||||||| | | || || | ||| || ||||| Sbjct 631201 CATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGT 631142 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 ||| | ||||||||||| | || | ||| | |||| ||||||||| | ||| || Sbjct 631141 AGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTC 631082 Query 63692 TATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | ||| ||| | ||| || || | | || | ||| | | || || ||||| |||| Sbjct 631081 CAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAA 631023 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 ||||| |||||| | | ||||||| ||||||| ||||| || ||||| || | Sbjct 631022 TAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAAT 630963 Query 63811 TGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 || ||||| |||||| |||| ||| || ||| ||| ||||||| Sbjct 630962 CATAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 143 bits (158), Expect = 3e-29 Identities = 347/520 (67%), Gaps = 4/520 (1%) Strand=Plus/Minus Query 33325 CCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33384 ||||| || | ||||||||||||||| || |||||||| | | | ||||| Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCTGCTTT 1241279 Query 33385 TTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33444 |||| |||||| |||| | ||| |||| ||| || || || ||||| ||| Sbjct 1241278 TTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCATTC 1241219 Query 33445 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | | || || || | | |||| | ||||||||| |||||| || Sbjct 1241218 GCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCACAGAGCT 1241159 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33564 || || || ||| || || | || || || | ||| |||| || | || || | Sbjct 1241158 TTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCTTCTCA 1241099 Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || || | || | || || || | ||||| | ||||||||||| ||||||| ||| Sbjct 1241098 TCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACGGCA 1241039 Query 33625 ATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTCT-GTACAAAATCGTT 33682 ||||| || || ||| ||| ||||| || || || |||| ||| ||| | | | Sbjct 1241038 ATCTGGAAGGAATA-AAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAATTTGCT 1240980 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 1240979 C-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTTTA 1240921 Query 33743 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 | || | |||||| | | ||| ||| | |||| || | ||| | || | || | Sbjct 1240920 TGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAA 1240861 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 ||| || ||||||| || || || || || || || || Sbjct 1240860 TTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTA 1240821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946981968480