Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq27 241 3e-58 seq23 104 6e-17 >seq27 Length=1720986 Score = 241 bits (266), Expect = 3e-58 Identities = 1097/1714 (64%), Gaps = 49/1714 (3%) Strand=Plus/Plus Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATC 363432 ||| || | |||||| || |||| || || |||| | ||||||||| ||| || Sbjct 630950 GATTTCAATTATGATTACTTTGGATTCAAAACCTTGGAAAGATCCTACCTCCTTCGAATA 631009 Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | ||| |||| | || || ||| | | ||| | || | || ||||||||| Sbjct 631010 AATGGAAAGATTATTGAGAGACCACAACATCTACTGATGAGAGTATCCATCGGTATCCAT 631069 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT--GTATTC- 363549 ||| | || ||| | || || || | || | || ||| ||||| Sbjct 631070 ATTGGAGATCTGGAAAAAGCGTTAGAGACGTACCATCTGAT--GT-CTCAGAAGTATTTT 631126 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 |||||||| || || || ||| |||| |||| || | | || || |||||||| || Sbjct 631127 ACGCACGCAACACCTACCTTGTTCAATTCTGGCACACCAAGACCCCAAATGTCTTCATGT 631186 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 ||||| || ||||| ||||| || || || || || || || || || | || Sbjct 631187 TTTCTCCTTTGCATGAAATCAGATTCGATTGAAGGCATTTTCGAGACTCTAAAACAGTGC 631246 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAG 363729 || || ||| ||| | || || || ||||| ||| | | || || || | | ||| Sbjct 631247 GCCCTGATTAGCAAAACAGCTGGTGGTATTGGAGTAGCAGTACAGGATATTAGAGGACAA 631306 Query 363730 AACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 || ||||||| | || || | || ||| || || || | || || ||||| | || Sbjct 631307 AATTCTTACATTAGAGGAACGAATGGAATA-TCCAACGGATTAGTACCAATGCTGAGAGT 631365 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 |||| | |||| || || || || ||||| ||||| |||||| | || || | || || Sbjct 631366 GTTTAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAGAGGAAGGGATCTTTCGC 631425 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CA 363907 ||||| |||| || ||| | ||||||||||||||| | || || || ||||| || Sbjct 631426 AGTGTATATCGAACCGTGGCATTCAGATATTTTTGAGTTTTTGGATCTTCGTAAAAATCA 631485 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 ||| || || ||| | | || | ||||| |||||||| | ||||| |||||| || Sbjct 631486 TGGG-AAGGAAGAACTAAGAGCTAGAGATCTTTTCTATGCTGTATGGGTACCTGACCTTT 631544 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 |||||||| | || ||| | | |||||| | | | ||||| | |||||||||| Sbjct 631545 TTATGAAGAGAGTAAAGGAAAACCAAAATTGGACTTTGATGTGCCCGAATGAATGTCCAG 631604 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 | | || |||||||| || | | ||||| ||| ||||| ||||| Sbjct 631605 GGTTAAGTGAGTCATGGGGTGCAGAATTCGAAAAGCTATATTTAAAATATGAGGAGGAGG 631664 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | | || | || ||| | | ||||| | ||||||||||| || || | |||| Sbjct 631665 GTATGGGTAAAAAAACAGTACTAGCACAAGATCTATGGTTTGCTATTCTGCAGAGTCAGA 631724 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 | || ||||| || || ||| |||| || ||||| || ||| ||||| || || Sbjct 631725 TAGAAACAGGGGTTCCGTACATGCTGTATAAGGATTCTTGTAACGCGAAGTCGAATCAAA 631784 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | | | ||||| || | || ||||| ||| ||||| |||||||| || | | Sbjct 631785 AAAATTTAGGTACGATAAAATGTAGTAACCTGTGTTGTGAGATCATTGAATATACATCAC 631844 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT-TCCGGCGTT-----TGTA- 364320 | ||||| |||||||||||| | || || |||||| | | | || |||| Sbjct 631845 CAGACGAAGTGGCCGTATGTAACTTGGCTTCTATCGCGTTGTGCAAATTTGTCGATGTAG 631904 Query 364321 AAAGATGGTACT----TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 | | | || | | ||| | || | || || || | || | | |||| | Sbjct 631905 ATAAAAGGGAATTCAATTTTA-----AGAAGCTGTACGAAATTACAAAAATTATTACTCG 631959 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 || | ||| | | || || | |||||| || || ||| ||||| ||||| || || Sbjct 631960 GAACTTGGACCAAATAATTGAAAGGAATTACTACCCTGTTCAGGAAGCTGAGCGATCGAA 632019 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 | | | || | || || ||| | || |||||||| | || ||| || ||| | || Sbjct 632020 CAAGAGACACAGACCTATAGGTATAGGAGTACAGGGATTGGCAGACACCTTCATGCTACT 632079 Query 364497 CAAGAT-GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 |||| ||| ||| || | || | ||||||| || || ||||||| Sbjct 632080 -TAGATACCCATATGAATCAGATTCTGCAAAAGAATTAAATAAAAGAATTTTCGAAACAA 632138 Query 364556 TGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCT 364614 |||||| ||| || | || | | || || |||||| ||| | ||| ||| Sbjct 632139 TGTATTATGCTGCTCTGGAGATGTCCATG-GAATTGGCACAAATATACGGACCTTACGAA 632197 Query 364615 ACTTATGAGGG--GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672 || ||| |||| || || || | ||||||| | ||||| ||| | |||||||| | Sbjct 632198 ACCTATCAGGGTAGT-CCAGCTAGC-CAGGGAATTCTTCAGTTCGATATGTGGAATGTGA 632255 Query 364673 CG-----CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGG 364727 | || || ||| ||||||||| || || | ||||| || || Sbjct 632256 AGGTGGATAATAAGT--ATTGGGACTGGGATAAACTGAAAGAAAAAATAAAGAAACACGG 632313 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 | || || || || ||| || ||||| || ||||| || ||||||| || || Sbjct 632314 ATTGAGAAATTCGCTTCTTTTAGCTCCAATGCCTACTGCTTCGACGTCACAGATTCTTGG 632373 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||||| |||| ||| ||||| | || || || |||| | | |||||||| || Sbjct 632374 CAACAATGAGTCCTTTGAACCATACACGAGTAACATTTACTACAGGCGGGTTCTGAGTGG 632433 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 ||||||| || || || || || | ||||| || | ||| || || ||||||| Sbjct 632434 AGAATTTTTTGTGGTGAACCCCCACTTATTGAAGGACCTCTTCGATCGTGGTCTGTGGGA 632493 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 ||| ||||||| | | | || || || || ||||| | ||| | | | Sbjct 632494 TGAGGACATGAAGCAACAGCTGATTGCACACAACGGAAGCGTGCAATATATTAGCGAAAT 632553 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC----GAACTC 365023 || | || ||||| | || ||||| || |||||||| || || |||| Sbjct 632554 CCCCAACGACTTGAAGGAGCTCTATAAAACTGTTTGGGAAAT---CAAGCAGAAGAAC-A 632609 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTAT 365057 |||||||||||||||||||||| || || || || Sbjct 632610 TCATTGATATGGCGGCCGATCGAGGCGCCTTCAT 632643 >seq23 Length=1360573 Score = 104 bits (114), Expect = 6e-17 Identities = 377/585 (64%), Gaps = 10/585 (2%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| || || | ||||||||| | || | || |||||| | ||||| | || | Sbjct 1025788 ATTTCCCCCTATTAACAACAAAGAAATTATTTCTGAGGGGAATAATTGAAGAGTTGCTCT 1025847 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGG 111432 |||| ||||| ||| ||||| | ||| | | | || || || | || |||| Sbjct 1025848 GGTTCATTCGGGGAGAAACAAACGGAAACACATTGTTAAAGAAGAACGTGAGGATATGGG 1025907 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGAAGAAG 111489 | | ||||||| | | || || || || || | || | | || ||| |||| Sbjct 1025908 AGGCAAATGGAACGAGGGAGTTCCTTGA--CAATAGGAAATTATTTC-ACAGAGAAGTGA 1025964 Query 111490 GTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCA 111549 ||| || ||||| |||| || || || ||| | ||||||||||| || |||| || || Sbjct 1025965 ATGACCTGGGACCTATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACA 1026024 Query 111550 TGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 || | ||| || || | || || |||||| | ||||| || || ||| | Sbjct 1026025 TGTATGACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATCCATTTAATAA 1026084 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | || | ||||| | | | ||||| | |||||||||| || | ||||| Sbjct 1026085 AAAATGAACCAACGAGTAGGAGAATTATCCTATGTGCATGGAATGTTAAAGATTTGGATC 1026144 Query 111670 AAATGGCACTTCCACCATGTC--ATCTTATGTGCCAGTTTTATGTACACGACGGGATGCT 111727 ||||||| | || || |||| ||||||||| || ||||| || ||| |||| || Sbjct 1026145 AAATGGCTTTACCTCCTTGTCATATCTTATGT--CAATTTTACGTTTTCGATGGGAAACT 1026202 Query 111728 TTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 |||||| |||||||| | ||| ||| | |||||||| || || || || || || Sbjct 1026203 GTCATGCATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATAGC 1026262 Query 111788 AAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATT 111847 | ||| | || | || | | || || || | ||| | | || | | || Sbjct 1026263 ATCTTATTCCATATTCACACACATGATTGCACAGGTGTGCAATTTACAGCCTGCACAGTT 1026322 Query 111848 CATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 ||| ||| || | ||| |||| || || |||| |||||||| || Sbjct 1026323 CATACACATTTTGGGAAATGCCCACGTCTACAACAACCACATAGA 1026367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353132421896