Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq26 127 1e-24 seq23 127 1e-24 seq21 127 1e-24 seq27 105 4e-18 >seq26 Length=1556943 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 87791 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 87850 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 87851 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 87885 >seq23 Length=1360573 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 98086 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 98145 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 98146 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 98180 >seq21 Length=1079809 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 984048 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGT 983989 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 983988 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 983954 >seq27 Length=1720986 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| ||||| || ||||| || | ||| |||||||| || |||||||| || Sbjct 554929 ACCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGA 554870 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | |||| ||||||||||||||||| || || || | ||| ||||| | ||| Sbjct 554869 CAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554810 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| ||||| || ||||| | | || || || || Sbjct 554809 AATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTAC 554750 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || ||||| | |||||| || || || ||||| Sbjct 554749 ATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || ||||| | ||| || ||||| || |||||||| | Sbjct 554246 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554187 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || ||||||||||||||||| || || || | ||| ||||| | || Sbjct 554186 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554127 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| ||||| || ||||| | | || || || | Sbjct 554126 GAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554067 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| | |||||| || || || ||||| Sbjct 554066 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || || || | ||| |||||||| || ||||| || | Sbjct 553562 TACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGG 553503 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | |||| ||||||||||||||||| || || || | ||| ||||||| || Sbjct 553502 ACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGG 553443 Query 38209 GGACGCCTTCTTTGTC 38224 | | |||||||| || Sbjct 553442 GAATACCTTCTTTATC 553427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || ||||| | ||| || ||||| || |||||||| | Sbjct 553790 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553731 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || ||||||||||||||||| || || || | ||| ||||| | || Sbjct 553730 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553671 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||| || ||||| | | || || || | Sbjct 553670 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553611 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| | ||| ||||| || || ||||| Sbjct 553610 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || ||||| | ||| || ||||| || |||||||| | Sbjct 554018 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553959 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || ||||||||||||||||| || || || | ||| ||||| | || Sbjct 553958 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553899 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||| || ||||| | | || || || | Sbjct 553898 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553839 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| | |||||| || || || ||||| Sbjct 553838 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || ||||| | ||| || ||||| || |||||||| | Sbjct 554474 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554415 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || ||||||||||||||||| || || || | ||| ||||| | || Sbjct 554414 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554355 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||| || ||||| | | || || || | Sbjct 554354 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554295 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| | |||||| || || || ||||| Sbjct 554294 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| ||||| || || ||||| | ||| || ||||| || |||||||| | Sbjct 554702 TACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554643 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || ||||||||||||||||| || || || | ||| ||||| | || Sbjct 554642 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554583 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||| || ||||| | | || || || | Sbjct 554582 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554523 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| | |||||| || || || ||||| Sbjct 554522 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947085699268