Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq27 255 7e-63 seq24 158 2e-33 >seq27 Length=1720986 Score = 255 bits (282), Expect = 7e-63 Identities = 822/1252 (66%), Gaps = 34/1252 (3%) Strand=Plus/Minus Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTAT-- 62540 ||| | ||||| || |||||||| || | ||||||| |||| || ||| | | Sbjct 632151 GCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCTT----TTGCAGAATCTGA 632096 Query 62541 --CAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 62597 || |||| || | |||| || || || | |||||| ||||| || || || ||||| | Sbjct 632095 TTCATATGGGTA-TCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTA 632037 Query 62598 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62657 ||||||| |||||||| || || |||||||| ||| ||| || ||||| | || | Sbjct 632036 TAGGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAA 631977 Query 62658 TAATTTTATTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62716 | |||| | | | ||| || ||| | ||| | || | ||| || ||||| Sbjct 631976 TTATTTGGTCCA-AGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTG 631918 Query 62717 AATCGCCC---ATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACG 62770 ||| || ||||| ||||| || ||| || | ||| |||| ||||| ||| Sbjct 631917 AATTCCCTTTTATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACG 631858 Query 62771 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 62830 || || || | | | ||||| || |||||| || || |||||||| || || Sbjct 631857 GCCACTTCGTCTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATC 631798 Query 62831 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 62890 || |||||||||| |||||| ||| |||||| | ||||||||| || ||| | ||| Sbjct 631797 GTACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGA 631738 Query 62891 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 62950 || ||||| |||||| | | ||| || ||| | || | || || | | Sbjct 631737 ACCCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTT 631678 Query 62951 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACA-ATCGTT-CGAACTCGTCTCCCC 63008 ||| || | | ||| | | ||| | || | | | | || |||| || | |||| Sbjct 631677 --TTTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCC 631620 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 | | | || |||||||||| ||| |||||||| | ||| | | || |||| Sbjct 631619 ATGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCT 631560 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63127 | |||| |||||||| || ||||| | ||| | ||| ||| || |||||||| | ||| Sbjct 631559 TTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTT 631501 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 |||| || || || ||| || |||||| | ||| | | |||||| ||||||||| Sbjct 631500 AGTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCAC 631441 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 ||||| | || | || | | ||| || || || || || |||| |||||| Sbjct 631440 GGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTA 631381 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGTACCATTGGTCCC 63306 || || | |||| | ||||||| |||||| | |||| || |||||| | ||||| || || Sbjct 631380 GCTGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTTGGATATTCCATTCGTTCC 631322 Query 63307 TGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63365 | || | || | | | | ||||| | || || || || || || || Sbjct 631321 TCTAATGTAAGAATTTTGT-CCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTG 631263 Query 63366 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 63425 |||| || | ||||| |||||| || || | ||||| || || ||| Sbjct 631262 TTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATT 631203 Query 63426 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 63485 ||||| ||| |||||||| |||||||||| | | || || | ||| || |||| Sbjct 631202 TCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGG 631143 Query 63486 TAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63545 |||| | ||||| ||||| | || | ||| | |||| ||||||||| | ||| | Sbjct 631142 TAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTT 631083 Query 63546 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 | | ||| ||| | ||| || || | | || | ||| | | || || ||||| ||| Sbjct 631082 CCAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCA 631024 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 | ||||| |||||| | | ||||||| ||||||| ||||| || ||||| || Sbjct 631023 ATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAA 630964 Query 63665 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 | || ||||| |||||| |||| ||| || ||| ||| ||||||| Sbjct 630963 TCATAATTGAAA--TCTCGTGTGTAATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 158 bits (174), Expect = 2e-33 Identities = 368/550 (67%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| ||||| ||||| || | |||||||| |||||| || |||||||| | Sbjct 1241353 AAATCTGTGTGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGT 1241294 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCC 32785 | | ||||||||| |||||| |||| | || || |||| ||| ||||| || Sbjct 1241293 AACTTGTTCTGCTTTTTAAACCAAAAAATGG-CACAGAAACTTCCACTAAATAAAATACC 1241235 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 ||||| |||| || | | || || || | | |||| | ||||||||| Sbjct 1241234 CTCTACACACGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTT 1241175 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 |||||| || || || || ||| || || |||| ||||| | ||| |||| Sbjct 1241174 GGCAGCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATT 1241115 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || | || || ||| || | || | || || || | ||||| | |||||||| Sbjct 1241114 CATTCTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATG 1241055 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 ||| ||||||| ||| || || || || || | ||||| || || || |||| Sbjct 1241054 AATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATTTGCACTTG 1240995 Query 33026 T-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 ||| ||| | | || ||||||||||| ||||||||| ||||||||||||||||| | Sbjct 1240994 GCGTAAAAATTTGCTC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGG 1240936 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 |||| ||||||||||| || | |||||| | | ||| ||| | |||| || | || Sbjct 1240935 CCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAAT 1240876 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | || | || | ||| || ||||||| || || || || || || || || | || Sbjct 1240875 CGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAAT 1240816 Query 33205 TCCAGATGTC 33214 ||| | ||| Sbjct 1240815 CCCAAACGTC 1240806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631778228800