Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq27 127 2e-24 >seq27 Length=1720986 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || ||||||| | || || ||||| || Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 553622 GACACGATTGAA--AATGTAAAAGCTAAAATACAA-GATAAAGAAGGTATTCCCCCTGAT 553678 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| |||| | || || ||||||| Sbjct 553679 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTAC 553738 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| |||||||||| || | || |||| || Sbjct 553739 AACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || ||||||| | || || ||||| || Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 553850 GACACGATTGAA--AATGTAAAAGCTAAAATACAA-GATAAAGAAGGTATTCCCCCTGAT 553906 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| |||| | || || ||||||| Sbjct 553907 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTAC 553966 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| |||||||||| || | || |||| || Sbjct 553967 AACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || ||||||| | || || ||||| || Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || ||||| ||||| ||||| ||||| Sbjct 554078 GACACGATTGAA--AATGTAAAAGCTAAAATACAG-GACAAGGAAGGTATTCCCCCTGAT 554134 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| |||| | || || ||||||| Sbjct 554135 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTAC 554194 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| |||||||||| || | || |||| || Sbjct 554195 AACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554244 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || ||||||| | || || ||||| || Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 554306 GACACGATTGAA--AATGTAAAAGCTAAAATACAA-GATAAAGAAGGTATTCCCCCTGAT 554362 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| |||| | || || ||||||| Sbjct 554363 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTAC 554422 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| |||||||||| || | || |||| || Sbjct 554423 AACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || ||||||| | || || ||||| || Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || || |||||||| ||||| ||||| Sbjct 554534 GACACGATTGAA--AATGTAAAAGCTAAAATACAA-GATAAAGAAGGTATTCCCCCTGAT 554590 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| |||| | || || ||||||| Sbjct 554591 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTAC 554650 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| |||||||||| || | || |||| || Sbjct 554651 AACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || | || || || ||||||| | || || ||||| || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| || ||||| ||||| ||||| ||||| Sbjct 554762 GACACGATTGAA--AATGTAAAAGCTAAAATACAG-GACAAGGAAGGTATTCCCCCTGAT 554818 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| ||||| ||||||||||| || | | || || ||||||| Sbjct 554819 CAGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTAC 554878 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| |||||||| |||| || || || | || |||| || Sbjct 554879 AACATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCA 25089 ||||||| | || || ||||| || ||||| || || | || |||| |||| || Sbjct 553368 CCATCACCTTGGATGTAGAGTCATCCGACACGATTGAA--AATGTAAAAGCTAAAATACA 553425 Query 25090 CTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAG 25149 || |||||||| ||||| || || || || | | ||||| ||||| |||||||||| Sbjct 553426 A-GATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAACAATTAG 553484 Query 25150 AAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGC 25209 | || | | || || ||| ||||| || ||||| |||||||| |||| ||||| Sbjct 553485 AGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACACTTAGTCT 553544 Query 25210 TAAGGCTAAGAGGAGG 25225 || | || |||| || Sbjct 553545 TACGTTTACGAGGTGG 553560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327852126820