Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq27 181 2e-40 seq19 113 8e-20 >seq27 Length=1720986 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| ||||| |||||||||||||| |||||||| | || || ||| Sbjct 553776 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 553717 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||| || Sbjct 553716 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 553657 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 553656 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 553597 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| |||||||| || || || ||||| Sbjct 553596 GTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| ||||| |||||||||||||| |||||||| | || || ||| Sbjct 554232 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554173 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||||||| Sbjct 554172 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTG 554113 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 554112 TCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554053 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || || || || ||||| Sbjct 554052 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || |||||||||| ||||| || ||||||||||| |||||||| | || || || Sbjct 554916 CGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCG 554857 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||||||| Sbjct 554856 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTG 554797 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 554796 TCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554737 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || || || || ||||| Sbjct 554736 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| ||||| |||||||||||||| |||||||| | || || ||| Sbjct 554004 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 553945 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||| || Sbjct 553944 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 553885 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 553884 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 553825 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || || || || ||||| Sbjct 553824 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| ||||| |||||||||||||| |||||||| | || || ||| Sbjct 554460 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554401 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||| || Sbjct 554400 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 554341 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 554340 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554281 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || || || || ||||| Sbjct 554280 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || || |||| ||||| |||||||||||||| |||||||| | || || ||| Sbjct 554688 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554629 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || || || ||||| ||||| || Sbjct 554628 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 554569 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 554568 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554509 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || || || || ||||| Sbjct 554508 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 150 bits (166), Expect = 3e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || || ||||||| ||||| || ||||||||||| || ||||| | || || || Sbjct 553548 CGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCG 553489 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || |||||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 553488 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTA 553429 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || || || || || ||||| | ||| ||||| |||||||||||| Sbjct 553428 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 553369 Query 68427 GTTTTTCC 68434 || ||||| Sbjct 553368 GTCTTTCC 553361 >seq19 Length=2400328 Score = 113 bits (124), Expect = 8e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| | |||||||| || |||||||| || || | | ||| |||| || Sbjct 232933 TACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 232874 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || | |||| || || ||||| || ||||| || |||||||| || | Sbjct 232873 CAACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTATCCTC 232814 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||| || || | || || || | || || || |||| |||||||||||| Sbjct 232813 AATTTTTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 232754 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 ||| || | || || ||||||| |||||| || || Sbjct 232753 TCCGGTTAATGTTTTTACGAATACTTGCATTTTGGTA 232717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622077432160